Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00671 ATGACTGACTCACTTAGAATTTCAACAAGGCAATCCTTGGGTTTCCACAATGGAAAAAGCCTTGCTCAACAGCCGGTTAGTGATCTCTTTGCAGCAAGAATCAAAGGTGAAATGATGAACACCTCAATGAAGGCTATGGAGGAATCGTGTTCACTAATCCCAATTCATGAACCACGATATCCTCCTGGTTTCTTATCTAGTCTTGGTGTAACTGGTGTAGACTTTTTTCCTTCGGAGAATGTCTTTCATAATGAGAAGCCTATTGATGGAAAGACCCTAAGCAAGAGATATAACAACTTTGGAGATGCTAGCTTAATTTCGAATTTACCAACCCTAGATATGACCTCTTCTTTGGGTTTAAATCCTAAAATGTTTGATCTACATACAAGTTACAGTGAGAGTTGTGAAATCCAACCTTGCTATGATACTTTTGGTCTAAACGAGAGCATAGCTTTGTGCCACAGCGACATGCATGGCCGCGAAAATAGTCCATCAAATAGCTCAAAAATTTCATCATTTATAAGTGAAGTTGCAACGACAAAAAGGCCTAGTAGTTGCTCTCTACCAAAAGAATCAGAGGCCAAAGCTAAGAGGTCAAGGCCATCATCATGCCCTCCCCTGAAGCAGATAAGAAAGGAAAAATTGGGGGATAGGATTCAAACTCTTCAAAGATTAGTAGCACCTTTCGGGAAGACCAGTACAGCCTCTGTGTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCACGCAAAGCAATAGAATGGTGCAGCTGAATACAAATAAAGTAGATAAAGAAGTGAAGGCAGACCTAAGAAGCAGAGGCTTGTGTCTTGTACCCCTTTCTTACGCATCGTTTATTCATCGTTGTGTTTAG 915 0.4066 MTDSLRISTRQSLGFHNGKSLAQQPVSDLFAARIKGEMMNTSMKAMEESCSLIPIHEPRYPPGFLSSLGVTGVDFFPSENVFHNEKPIDGKTLSKRYNNFGDASLISNLPTLDMTSSLGLNPKMFDLHTSYSESCEIQPCYDTFGLNESIALCHSDMHGRENSPSNSSKISSFISEVATTKRPSSCSLPKESEAKAKRSRPSSCPPLKQIRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSTQSNRMVQLNTNKVDKEVKADLRSRGLCLVPLSYASFIHRCV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00671 304 SMART finulus 205 254 IPR011598 GO:0046983
Vimu11g00671 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Vimu11g00671 304 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 120 298 - -
Vimu11g00671 304 CDD bHLH_AtbHLH_like 211 256 IPR045239 -
Vimu11g00671 304 Gene3D - 207 278 IPR036638 GO:0046983
Vimu11g00671 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 262 IPR036638 GO:0046983
Vimu11g00671 304 MobiDBLite consensus disorder prediction 183 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00671 Vimu-Chr11 7174879 7176991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00671 163 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 49.306 2.90e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00671 - - vum:124832810 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00671 11 7174879 7176991 Vimu11g00671 11 7174879 7176991 ECH