Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00646 ATGGCCATATCAAAAGTTGTGAAGGAAGCTTGTGGCTCAAGGTTACTAAAGAACCGAGTTTGTCATGAGAGAACCAAACATACTGGCACTAAGTTGCATTTTGTAAGAGAGGAGATTGCCAAAGAATTTGTGACGTGTTGTTCTGGGCTTGTACCTGTTCCCTGCCTAATGTTAGAGAAGTTTGTTCATGAGCCAAGGTGGAGATTTGTTGGTTTTTGGCTCGGTCAACTAGATGTATCGACTATCTCTAGCATTGTCATATCACCTGTCTATTCTATCAACTGCATTCCCATAGAGCTGGCGTGTTTCACATCAGTTTCTTTATCAGTCTTTGGCTTTCCAATTCTTGTTGGTATGAGAACACTTCAAGGATTGGTGAGCCGTGAGAACATGTTGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATAGGTAGCACATCTAAGCGGGGTGCAGGTGCAGAAAGCAAGCTTCGGCTCAGTCAAACTAAGTCACATATTGCTCCAGATGTTCTTGCAACTACATTTGAATTTGTTCAACAGGGACAATGGGCAAATCTTCCACAAGAATTGCTTTTTGACATAATCCAAAGGGTTGAAGAGAGTGAAACATCTTGGCCTGACCGAGCTGTTGTTGTCTTCTGTGCTTCTGTATGTAAATCGTGGAGGTCGATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCACGTGATTCTCCAATACAGTGCTTTATAAGGAGGAACAAAGAAAGTTCTACATATCTATTGTACTTTGCAGAGAATGACAATAACAAGTTGTTATTAGCGGCCAAAAGGATAAGAAGGGCAACAGGCACTGATTTTGTCATATCCTTGGCCACAGATGATTTTTCCCGAGCCAGCAATAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATACATGACAGTCAACCTCCCCATGATGCTGCAATTCAACCCAATTGTCAATATAGTAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCTTGTAGCTACCTTGTTAGCACAGTTTCCTACGAGCTGAACGTCCTTTGTACTAGAGGGCCAAGAAGAATGCATTGTGTCATGAACTCTATACCCGTCTCAGCAATTCAGGAAGGGGGCAACGCCCCAACTCCAACTTCTTTCCCTCAAATATTTGATGAACCTTTTTCTCCATCACCAGCAGCGAAAGAAAAAGTTCCAGTCCCCGATTTAAACTCTGCAAGCTTATCAGAGCCACTAATATCCAGCCAAGTTTCAACTGAGCAATTAGAACTGAAAAACAAGGCTCCACGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTGTCTGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCATCTCATAACATTTCTGCTGAGGAGCAAGACAAGGTAATCCTGCAGTTTGGAAAGATTGGGAAAGACATATTCACCATGGATTACCGTTATCCGCTCTCTACCTTCCAAGCCTTTGCCATATGCTTGAGTAGCTTTGACACAAAACCTGCCTGTGAATGA 1629 0.4285 MAISKVVKEACGSRLLKNRVCHERTKHTGTKLHFVREEIAKEFVTCCSGLVPVPCLMLEKFVHEPRWRFVGFWLGQLDVSTISSIVISPVYSINCIPIELACFTSVSLSVFGFPILVGMRTLQGLVSRENMLLRSIVRELKEMRDGIGSTSKRGAGAESKLRLSQTKSHIAPDVLATTFEFVQQGQWANLPQELLFDIIQRVEESETSWPDRAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKESSTYLLYFAENDNNKLLLAAKRIRRATGTDFVISLATDDFSRASNKYVGKLRSNFLGTKFTIHDSQPPHDAAIQPNCQYSRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIFDEPFSPSPAAKEKVPVPDLNSASLSEPLISSQVSTEQLELKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQDKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00646 542 ProSitePatterns Tub family signature 1. 470 483 IPR018066 -
Vimu11g00646 542 Pfam Tub family 248 537 IPR000007 -
Vimu11g00646 542 PRINTS Tubby superfamily signature 298 314 IPR000007 -
Vimu11g00646 542 PRINTS Tubby superfamily signature 452 469 IPR000007 -
Vimu11g00646 542 PRINTS Tubby superfamily signature 470 486 IPR000007 -
Vimu11g00646 542 PRINTS Tubby superfamily signature 314 338 IPR000007 -
Vimu11g00646 542 PRINTS Tubby superfamily signature 363 390 IPR000007 -
Vimu11g00646 542 PRINTS Tubby superfamily signature 520 542 IPR000007 -
Vimu11g00646 542 PRINTS Tubby superfamily signature 499 518 IPR000007 -
Vimu11g00646 542 SUPERFAMILY F-box domain 183 231 IPR036047 GO:0005515
Vimu11g00646 542 CDD F-box_AtTLP-like 187 231 - -
Vimu11g00646 542 Pfam F-box domain 187 234 IPR001810 GO:0005515
Vimu11g00646 542 PANTHER TUBBY-RELATED 161 540 - -
Vimu11g00646 542 Gene3D - 180 233 - -
Vimu11g00646 542 SUPERFAMILY Tubby C-terminal domain-like 236 542 IPR025659 -
Vimu11g00646 542 ProSitePatterns Tub family signature 2. 527 542 IPR018066 -
Vimu11g00646 542 Gene3D Tubby Protein; Chain A 245 542 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00646 Vimu-Chr11 6916442 6919430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00646 131 542 TUB Transcription Factor Family AT2G18280 60.190 1.04e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu11g00646 Tub 5.3e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00646 K19600 - gmx:100805380 748.043