Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00633 ATGAGAGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTCTCCAATAGAAATTCATCTTCCTCCAAATTATCATCACCAATAGGGGAAAGAAGTGACCAACCTCCTCAATCTCAAACGTTGATTTTCAGTGATCCTCCCCAAACAACTTCACATCATCACCATCCCCTCAACCCACCAAACCCTCTTCAACTTCCACATCCTCACAGACCCAGAAGAGATCCAGATCCAACTCCTATTTCTCCTCCTGTCATAACCACCCCAAGAACACAACCACACTCAACACCAACATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCCAGCATGGGGGGTCATGTCACAGATGGCTGTGGGGAGTTTATGCCAAATGGAGAAGAAGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAATCATCACAACATGTTCTCAACTACCACCTCACTTACCCCAACAAAACCAATAGAAACATTGTTATTCATTCTCCGCAATCTCATCTTCAGTTACCTACACCCCACCTTCACGGGGTGGTGGCTACCCCTTCAGGTGGGCCGGTTCAGCCCGCGATGTTGGGCTTTGGGGGGACCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGATGCAGGGCAATTATTATCAGTGCAGCCACCACTGTCATCATCCAAGAAGAGGTTCAGGACAAAGTTCTCACAGCAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTCGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 933 0.4673 MREQDKVIEMPSTLGYNLSNRNSSSSKLSSPIGERSDQPPQSQTLIFSDPPQTTSHHHHPLNPPNPLQLPHPHRPRRDPDPTPISPPVITTPRTQPHSTPTFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGESSQHVLNYHLTYPNKTNRNIVIHSPQSHLQLPTPHLHGVVATPSGGPVQPAMLGFGGTPAESSSEDLNMFQTDDAGQLLSVQPPLSSSKKRFRTKFSQQQKDKMMEFAEKLGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00633 310 MobiDBLite consensus disorder prediction 1 100 - -
Vimu11g00633 310 MobiDBLite consensus disorder prediction 13 61 - -
Vimu11g00633 310 FunFam Zinc-finger homeodomain protein 2 237 307 - -
Vimu11g00633 310 Pfam ZF-HD protein dimerisation region 102 154 IPR006456 -
Vimu11g00633 310 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 78 303 - -
Vimu11g00633 310 SUPERFAMILY Homeodomain-like 240 307 IPR009057 -
Vimu11g00633 310 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 103 153 IPR006456 -
Vimu11g00633 310 Gene3D - 236 307 - -
Vimu11g00633 310 NCBIfam homeobox domain, ZF-HD class 246 303 IPR006455 -
Vimu11g00633 310 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 104 153 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00633 Vimu-Chr11 6832792 6833724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00633 80 310 ZF-HD Transcription Factor Family AT2G18350 48.319 1.71e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu11g00633 ZF-HD_dimer 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00633 - - ccaj:109810490 446.047