Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00618 ATGGCATTAGGCAGAACCGAAGCCTTTCCAGATTTGGGTGAACATTGTCGACACAACGATTGCCACCAACTCAATTTTCTTCCTTTCACATGCCAAGGTTGCCAAAATGTTTTTTGTTTGGAGCACAAATCCTTCAAGTCTCACGCATGCAAGAATTCCAACCACAACAACAGAAAAGTAGTTGTCTGCGAAACGTGTTCCATGTCCATTGAGACCACCTATTATGTGGAACAGGAAGAGGAGACAATCTTGGAGAAGCACCTAAAGCTTGGCATTGAGTGCTACTTTCTGGACACTAAGCACCACTTTTGTGATTTGGGGGTTAAAGGTTTTGTGCTGTTTGGGAATCTTGAATTGATTCTTGTGCTTTGGTGGTTTCATGTGATTGCTTAG 393 0.4275 MALGRTEAFPDLGEHCRHNDCHQLNFLPFTCQGCQNVFCLEHKSFKSHACKNSNHNNRKVVVCETCSMSIETTYYVEQEEETILEKHLKLGIECYFLDTKHHFCDLGVKGFVLFGNLELILVLWWFHVIA 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00618 130 Gene3D - 3 67 IPR035896 -
Vimu11g00618 130 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Vimu11g00618 130 SUPERFAMILY AN1-like Zinc finger 9 61 IPR035896 -
Vimu11g00618 130 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 94 - -
Vimu11g00618 130 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00618 Vimu-Chr11 6669402 6672409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00618 1 91 C2H2 Transcription Factor Family AT3G28210 60.440 2.35e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00618 - - gmx:100500384 147.517