Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00615 ATGTCTTCCCCTAATAAGAAATCTGAACCCCATAACAACACACCCGATGACGCCACCCCCGACGACGCCACCCCCGACAACGCCACTCCCGATGACTCCACACCGGACAATGCCACCCCCGACAATGCCACGCCCGATAAATCAAATGGATCACATAAAGGTTCCTCATCGTCGTCCACTCATTCACCGCCGACCAAAGAGTCACATAAATCGCTGTCGCATGAAAAGCTGCCAGCGTCAAACAACGAGGATGGCACCAATAAAGCAGCATTGGGAGCGGGGATCGGAGTTGGGTTTGTCATTCTGGTGTTGCTCGTTGTGTGTTTGGTTTGGTGTTGCAGGAGGAAGAAGCGAAAGCAGAATAAAAACTACTATTACGCATCTCCTTCTAAAGGAAAAGCAGCTAACAATTATTACAACACTGGACAACAATCTCTTCCTCATTGGCAAGCAGGAGCTGGTCCTCATATGGGGGAGCATGTTGTGAGGGTTCAACAACAGCAACAGCAACAGGGGATGGGGATGGGGATGGGTATGCAGATGGGGATGCAGATGGGAATGGGAATGGGTCCTCCTAGTAGTGGCTGGGGAACATCACATCCTCAAATGAGCAGTGGTGATATGAGCTCTAATTATTCAGCGGGTATGGGTTCCTCATCGCCAGGCCTTCCTCTCACGCTCAAAAGTGGTACCTTCACTTATGAGGAGCTAGCAGCTGCCACCAAAGGATTTGCCAATGACCAGATTATTGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAGTTTTGCCTAATGGAAAGGAAGTCGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGCGAGTTCCAAGCTGAGATTGAAATCATCAGTCGTGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAAAGAATGCTCGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGTAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCGATTGGATCTGCCAAAGGGCTTGCCTACCTTCACGAAGATTGTAGCCCTCGAATTATCCATCGCGACATTAAAGCTTCTAATGTCCTTCTTGATCTAAGCTTTGAAGCCAAGGTGTCTGATTTTGGACTTGCAAAGTTGACCAATGACACCAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACTTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATAACAGGGAAACGACCTGTAGATCCAACGAATGCCATGGAAGACAGTTTAGTGGATTGGGCTCGACCACTCCTGAATAAAGGATTGGAGGATGGGAACTTTGGAATGTTGGTGGATCCATTTTTGGAAGGTAACTACAATGCCCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATTCGTCATTCTGCTAAGAAGCGTTCAAAAATGAGTCAGATTGTGAGAGCACTGGAAGGAGATGTCTCATTGGAAGACTTAAAAGATGGAATGAAACTTACAACAGGGAATGGGAATAGTGGCGCCTACCCTTCTTCCTCTGGAAGCTCAGAATATGATACCATGCAATACAATGCTGATATGGCAAAGTTCAGACAGGCAATAATGTCCAGCCAAGAATTTAATGACAGTGGTGAGCTTTCCAGTAAGGAGATCGGATATCATTAG 1761 0.4656 MSSPNKKSEPHNNTPDDATPDDATPDNATPDDSTPDNATPDNATPDKSNGSHKGSSSSSTHSPPTKESHKSLSHEKLPASNNEDGTNKAALGAGIGVGFVILVLLVVCLVWCCRRKKRKQNKNYYYASPSKGKAANNYYNTGQQSLPHWQAGAGPHMGEHVVRVQQQQQQQGMGMGMGMQMGMQMGMGMGPPSSGWGTSHPQMSSGDMSSNYSAGMGSSSPGLPLTLKSGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIAIGSAKGLAYLHEDCSPRIIHRDIKASNVLLDLSFEAKVSDFGLAKLTNDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTNAMEDSLVDWARPLLNKGLEDGNFGMLVDPFLEGNYNAQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKDGMKLTTGNGNSGAYPSSSGSSEYDTMQYNADMAKFRQAIMSSQEFNDSGELSSKEIGYH 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00615 586 ProSiteProfiles Protein kinase domain profile. 244 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00615 586 MobiDBLite consensus disorder prediction 195 215 - -
Vimu11g00615 586 MobiDBLite consensus disorder prediction 1 83 - -
Vimu11g00615 586 MobiDBLite consensus disorder prediction 26 66 - -
Vimu11g00615 586 Gene3D Transferase(Phosphotransferase) domain 1 320 530 - -
Vimu11g00615 586 Gene3D Phosphorylase Kinase; domain 1 219 319 - -
Vimu11g00615 586 MobiDBLite consensus disorder prediction 192 215 - -
Vimu11g00615 586 Pfam Protein tyrosine and serine/threonine kinase 247 447 IPR001245 GO:0004672|GO:0006468
Vimu11g00615 586 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 99 566 IPR047117 -
Vimu11g00615 586 FunFam Proline-rich receptor-like protein kinase PERK1 320 527 - -
Vimu11g00615 586 SUPERFAMILY Protein kinase-like (PK-like) 223 516 IPR011009 -
Vimu11g00615 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Vimu11g00615 586 FunFam proline-rich receptor-like protein kinase PERK1 222 319 - -
Vimu11g00615 586 SMART serkin_6 244 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00615 586 ProSitePatterns Protein kinases ATP-binding region signature. 250 272 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00615 Vimu-Chr11 6629136 6632554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00615 77 579 Trihelix Transcription Factor Family AT1G70460 49.016 2.31e-152 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu11g00615 PK_Tyr_Ser-Thr 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00615 - - gmx:100805872 796.578