Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00609 ATGACGGTTGATTTGGACAACGTTTCCACAGTGTCAGGGGAAGCAAGCATGTCTTCCTCTGGCAATCAAACAAAACCTGCTCCCAAGAGAAAACGAAACCTCCCTGGCATGCCAGATCCTGAGGCAGAAGTCATTGCTCTGTCGCCGAAGACGCTCTTGGCGACGAACCGGTTCGTCTGCGAGATATGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGGAGAGGTCACAACTTGCCGTGGAAGCTGAGGCAGAGGTCCACCAAGGAGGTAAGGAAGAGAGTGTACGTGTGTCCCGAACCTGCGTGCGTGCACCACGACCCTTCTAGAGCCTTGGGGGACTTGACGGGGATTAAGAAGCACTTCTGCAGGAAGCACGGTGAGAAGAAGTGGAAATGCGACAAATGCTCCAAGAAATACGCCGTTCAGTCGGATTGGAAAGCGCACTCCAAAGTGTGCGGCAATAGAGAGTATAAGTGCGATTGTGGAACCGTTTTCTCCAGGAGGGATAGCTTCATTACGCATAGAGCGTTTTGCGATGCGTTGGCCAAGGAGGGTGCGAGATCTCACACTGTTGTTACCAAGGCTAATGAGGAGAATGATTCAATGGTTTTAACCGACTCACCGCCGCCGGAGGTTGCGGCGGCTGCAGCCAGCACCCCTGCGCAGTCAAACAGTGTCATATCTTCTGGTGTGCAGACACAGAACCCAGAGTTACCGGAAAGCAATCCCCCACAAGTCATTGAGGAGCCTCAAGCTACTACTGCTATAAGTGGGAGCTCTGGCAGGAACAATAACAGTAGTACCAATTGCTCATCAAGCAATGGTGGTGCTACTAATAATAGTAATAGTAGTAGTGTGTTTGCAAGTTTGTTTGCTTCTTCAACATCATCTGGGACTCTACAATCTCAAACACCAGCATTCGGTAACTTAGTTAGAGCCATGGGGCCTCCAGATCATCGTGCAGATATCACAGCTCCCTCTTCGTCTGAGGCCATATCTCTTTGCCTCTCCACCAGTAATGCCTCATCAATATTCGCAACAGGAGGGCAAGAGCACCGGCAGTATGCCTCGCCTCCGCAACCGGCCATGTCAGCCACTGCATTGCTGCAGAAAGCTGCTCAGATGGGTGCTGCAGCCACAAATGCCTCTCTACTTCGCGGGTTTGGCATTGTGTCATCATCTTCAGCTTCAACTCCATCAGGGCAGCAAAATGGCCTGCAATGGGGTCAGCCTCAGTTAGAATCTGAGAGTGTTTCGGTTCCTGCAGGGCTTGGACTTAGTCTTCCATGTGATGGTGATTCTGGACTGAAGGAATTGATGACGGGGACACCCTCCATGTTTGGTCCTAAACACACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGAGGCTTATCTGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTGCTGCTGCAGCTGCAGCAGGAACCTTTGGTAATGGGGAGTTTTCTGGCAAAGATATTGGAAGGAGGAGCTCTTGA 1527 0.5088 MTVDLDNVSTVSGEASMSSSGNQTKPAPKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGNREYKCDCGTVFSRRDSFITHRAFCDALAKEGARSHTVVTKANEENDSMVLTDSPPPEVAAAAASTPAQSNSVISSGVQTQNPELPESNPPQVIEEPQATTAISGSSGRNNNSSTNCSSSNGGATNNSNSSSVFASLFASSTSSGTLQSQTPAFGNLVRAMGPPDHRADITAPSSSEAISLCLSTSNASSIFATGGQEHRQYASPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSASTPSGQQNGLQWGQPQLESESVSVPAGLGLSLPCDGDSGLKELMTGTPSMFGPKHTTLDFLGLGMAAGGGLSALITSIGGGLDVAAAAAAGTFGNGEFSGKDIGRRSS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00609 508 MobiDBLite consensus disorder prediction 1 27 - -
Vimu11g00609 508 MobiDBLite consensus disorder prediction 201 283 - -
Vimu11g00609 508 Gene3D Classic Zinc Finger 112 191 - -
Vimu11g00609 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vimu11g00609 508 FunFam protein indeterminate-domain 12-like 37 105 - -
Vimu11g00609 508 SMART c2h2final6 134 154 IPR013087 -
Vimu11g00609 508 SMART c2h2final6 99 129 IPR013087 -
Vimu11g00609 508 SMART c2h2final6 58 80 IPR013087 -
Vimu11g00609 508 Gene3D Classic Zinc Finger 38 104 - -
Vimu11g00609 508 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vimu11g00609 508 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Vimu11g00609 508 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Vimu11g00609 508 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vimu11g00609 508 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 468 IPR031140 -
Vimu11g00609 508 MobiDBLite consensus disorder prediction 221 283 - -
Vimu11g00609 508 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00609 Vimu-Chr11 6562569 6564822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00609 1 507 IDZ Gene Family AT5G66730 56.261 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g00609 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00609 K25869 - gmx:100783947 718.383