Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00605 ATGGGGGCTGGGGAAGAGAGCACAACTAAACCTTCAAAGTCATCTTCATCAGTTCAGGAGACGCCAACAGTGCCTGCATATCCTGATTGGTCAAGCTCCATGCAGGCCTATTATTCTCCTGGAGCCACTCCACCCCCCTTTTTTGCCTCAACCGTTGCTTCCCCAACTCCCCATCCCTTTTTATGGGGAAGCCAGCATCCCTTGATGCCGCCATATGGGACACCAGTCCCATATCCAGCTTTATATCCTCCTGGGAGTATCTATCCTCATCCAAGCATGGCAGTGACTCCGAGTGCTATCCAGCAAAGTACGGAGATTGAAGGGAAGGGAGCTGATGGAAAGGATCGAGACTCGTCCAAAAAATTGAAAGGAACTTCTGCAAATACAGGTTCCAAAGCAGTTGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATGTCGCAAAGTGGTGAAAGTGGTTCGGAGGGTTCATCAAATGCCAGTGATGAGAATACTAACCAACAGGAATCAGCTACAAACAAGAAGGGAAGCTTTGACCTGATGCTTGTGGATGGAGCCAATGCCCAGAACAATTCTGTGGGTGCCATTTCTCAATCTTCTGTGCCTGGAAAGCCTGTTGTCTCAATGCCAGCTACTAATCTTAATATTGGAATGGACTTATGGAACCCCTCAACTGGTGGTGCAGAAGCTGCAAAAATGAGACATAATCAATCTGGTGCCCCAGGAGTTGTTGCCCTTGGTGAACAATGGATACAAGATGAACGTGAGCTGAAAAGACAGAAGAGGAAACAGTCGAACAGAGAGTCAGCTAGGAGGTCAAGGTTACGCAAGCAGGCTGAGTGCGAAGACTTACAAAAGAGGGTGGAGACACTGGGAAGTGAGAATCGAAAACTCAGAGAAGAGCTTCAGAGACTTTCTGAAGAATGCGAGAAGCTTACATCTGAAAATAATTCAATCAAGGAAGAGTTGGAACGGATGTGTGGGCCAGAAGCAGTTGCTGACCTTGGATGA 1017 0.4789 MGAGEESTTKPSKSSSSVQETPTVPAYPDWSSSMQAYYSPGATPPPFFASTVASPTPHPFLWGSQHPLMPPYGTPVPYPALYPPGSIYPHPSMAVTPSAIQQSTEIEGKGADGKDRDSSKKLKGTSANTGSKAVESGKAGSGSGNDGMSQSGESGSEGSSNASDENTNQQESATNKKGSFDLMLVDGANAQNNSVGAISQSSVPGKPVVSMPATNLNIGMDLWNPSTGGAEAAKMRHNQSGAPGVVALGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEDLQKRVETLGSENRKLREELQRLSEECEKLTSENNSIKEELERMCGPEAVADLG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00605 338 MobiDBLite consensus disorder prediction 123 177 - -
Vimu11g00605 338 CDD bZIP_plant_GBF1 261 311 IPR045314 GO:0003700|GO:0006355
Vimu11g00605 338 SUPERFAMILY Leucine zipper domain 259 315 IPR046347 GO:0003700|GO:0006355
Vimu11g00605 338 MobiDBLite consensus disorder prediction 258 282 - -
Vimu11g00605 338 Pfam bZIP transcription factor 256 318 IPR004827 GO:0003700|GO:0006355
Vimu11g00605 338 MobiDBLite consensus disorder prediction 93 180 - -
Vimu11g00605 338 SMART brlzneu 256 320 IPR004827 GO:0003700|GO:0006355
Vimu11g00605 338 MobiDBLite consensus disorder prediction 309 338 - -
Vimu11g00605 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 258 321 IPR004827 GO:0003700|GO:0006355
Vimu11g00605 338 Coils Coil 269 324 - -
Vimu11g00605 338 Pfam G-box binding protein MFMR 1 93 IPR012900 -
Vimu11g00605 338 MobiDBLite consensus disorder prediction 309 330 - -
Vimu11g00605 338 Gene3D - 259 313 - -
Vimu11g00605 338 FunFam BZIP transcription factor 258 309 - -
Vimu11g00605 338 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 333 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vimu11g00605 338 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 263 278 IPR004827 GO:0003700|GO:0006355
Vimu11g00605 338 MobiDBLite consensus disorder prediction 1 30 - -
Vimu11g00605 338 MobiDBLite consensus disorder prediction 108 122 - -
Vimu11g00605 338 MobiDBLite consensus disorder prediction 44 80 - -
Vimu11g00605 338 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00605 Vimu-Chr11 6504989 6507825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00605 1 337 bZIP Transcription Factor Family AT4G36730 53.982 2.19e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu11g00605 MFMR 9.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00605 K09060 - gmx:778124 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00605 11 6504989 6507825 Vimu11g00605 11 6504989 6507825 ECH