Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00604 ATGGCGCAAGAACGTCGATTCGTCTCTCTCTGCGACCCTGCTCTCATCCTCCATCTCTCACTATCAATGCTTGGTTCCGCTTACACTGAAAATGACGATGATGCTATCGAAGAAGATGATGATTTTGTCTTCGACATAGATCCTACCGTGTTAGTGGATACTCGTAAACTTATAATTGATGAACCGATCGCTGAAGGGTTGCATTCAATTGTCTACAAAGGATGGTATGAACTGAATCCTGTATCTATAAAGGTTATGCTTCCAATGCAAACATCAAACGTTCCTTCTTCTTGCAAAGCAAAATTTCAGCGGGAGTTTATTGGCGCCTCTGTGGAGCCAACAATGATGATAATTACAGAACTTTTTGAAGGTTGTTCGCTACATAAATACCTAGAGAGCATTTATCCAAATGCTCTTAGTTTAGAGCAATCCATAAGTTTTGCTTTGGATATTTCTCAAGCCATGGAGTATCTGCATGCAAATGGCATTATTCACCGCGATCTAAAACCTGGTAATTTGCTTGTTCCCAAAGACAAAATGCAAATATTACTTACAAACTTTGAGACAGCTAGAGAGGAGATATCTGGTGAGATGACTTCTGAGGCTGGTACATATCGATACATGGCTCCTGAGTTATTCAGCAAGGATCCACTTTCTAAAGGAGCCAAGAAATGCTATGACCATAAAGTAGACGTCCATAGCTTTGCTATGGTTCTATGGGCAATAGTTAAAAACCAGATTCCATTTAAAGGAAGGAGTGACTTGCTAGCAGCATATGCTACTGCAAAAAAGATGAGGCCTAGTTTGGAGGGTTTTCCAGAAGTTCTACTTCCATTACTGCAGTCTTGTTGGGAAGAAGACCCAAAGCTACGACCTGAATTCTCAGAGATCACCCAAATCCTTGAAAAACTCCTCCATGACTATCACTCAACAGGTATATCAGCTGATGAGGAAAAAGTATGTCCAACTACAAGTGTGCAGGAACTTATCCCCAATTATGTTGATCAAGACAACTCAGAACATCAAAATGAGGCTCAGAATCTGAATACCAGTGTATGCTTAGAGGGACAATCTGAGGTCATAACACAAAACTCTAGTCCAGTTTTAGCCCAAACCAAGCATAAAAGGACTCTTAAGAAGTGCAAGGGTTTATGGTTATGCTTTCGAAAATGCTTTCACAATTGTTAA 1188 0.4032 MAQERRFVSLCDPALILHLSLSMLGSAYTENDDDAIEEDDDFVFDIDPTVLVDTRKLIIDEPIAEGLHSIVYKGWYELNPVSIKVMLPMQTSNVPSSCKAKFQREFIGASVEPTMMIITELFEGCSLHKYLESIYPNALSLEQSISFALDISQAMEYLHANGIIHRDLKPGNLLVPKDKMQILLTNFETAREEISGEMTSEAGTYRYMAPELFSKDPLSKGAKKCYDHKVDVHSFAMVLWAIVKNQIPFKGRSDLLAAYATAKKMRPSLEGFPEVLLPLLQSCWEEDPKLRPEFSEITQILEKLLHDYHSTGISADEEKVCPTTSVQELIPNYVDQDNSEHQNEAQNLNTSVCLEGQSEVITQNSSPVLAQTKHKRTLKKCKGLWLCFRKCFHNC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00604 395 PRINTS Tyrosine kinase catalytic domain signature 272 294 IPR001245 GO:0004672|GO:0006468
Vimu11g00604 395 PRINTS Tyrosine kinase catalytic domain signature 119 132 IPR001245 GO:0004672|GO:0006468
Vimu11g00604 395 PRINTS Tyrosine kinase catalytic domain signature 157 175 IPR001245 GO:0004672|GO:0006468
Vimu11g00604 395 SMART serkin_6 57 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00604 395 Pfam Protein tyrosine and serine/threonine kinase 106 301 IPR001245 GO:0004672|GO:0006468
Vimu11g00604 395 Gene3D Transferase(Phosphotransferase) domain 1 32 336 - -
Vimu11g00604 395 SUPERFAMILY Protein kinase-like (PK-like) 50 329 IPR011009 -
Vimu11g00604 395 ProSiteProfiles Protein kinase domain profile. 1 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00604 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Vimu11g00604 395 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00604 Vimu-Chr11 6480903 6491298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00604 39 310 MAP Kinase Kinase Kinase AT5G66710 50.174 6.10e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu11g00604 PK_Tyr_Ser-Thr 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00604 - K04427 pvu:PHAVU_003G251900g 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00604 11 6480903 6491298 Vimu11g00604 11 6480903 6491298 ECH