Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00603 ATGAATAATCGACTTGAAGGCCAAATGATGCTCTTCTCTCACCAATATCCTGGTGCATTCACTGAACTAACTCCTCCTCAACAAGGCAAAGAAGCCAAGCCAAGACGCAAGAGAAACAAAAATGGTGCTGCGGCCACCCCCAAGAAGAGAAAGCTCACTGCCGAGCAAGTTAGTCTTCTCGAGAAAAATTTCTGCAGTGAACAGAAACTTGAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAAACCAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACCATGCTTCAGAAGTGCCACCTTGAGACTCGGGTATTGAAGCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGTTACAAGAGCGTGGTGAAAGAGCCGCAAGCAAACATTTACTGGAAGCTGTGAACCCACCATTTCCTGAAGAGTTTAGGGTGGAAGAATATGATTATGACGATGTTTTCTACATTCCGGAAACTCATTACATCAATGGAATGGAGTGGATTAATCTCTACATGTGA 603 0.4395 MNNRLEGQMMLFSHQYPGAFTELTPPQQGKEAKPRRKRNKNGAAATPKKRKLTAEQVSLLEKNFCSEQKLESERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLLEAKKEIQQLQERGERAASKHLLEAVNPPFPEEFRVEEYDYDDVFYIPETHYINGMEWINLYM 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00603 200 CDD homeodomain 48 104 IPR001356 GO:0003677
Vimu11g00603 200 SMART HOX_1 46 107 IPR001356 GO:0003677
Vimu11g00603 200 MobiDBLite consensus disorder prediction 19 51 - -
Vimu11g00603 200 Gene3D - 39 111 - -
Vimu11g00603 200 SUPERFAMILY Homeodomain-like 48 111 IPR009057 -
Vimu11g00603 200 Coils Coil 130 157 - -
Vimu11g00603 200 Pfam Homeodomain 48 101 IPR001356 GO:0003677
Vimu11g00603 200 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Vimu11g00603 200 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Vimu11g00603 200 FunFam homeobox-leucine zipper protein ATHB-40 42 111 - -
Vimu11g00603 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 152 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00603 Vimu-Chr11 6464220 6465743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00603 1 200 Homeobox Transcription Factor Family AT4G36740 47.248 1.74e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu11g00603 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00603 K09338 - gmx:100803948 262.692