Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00588 ATGGGTTGGTTTACTAAATTGCTCAAGGGATCCAACCGTAAACATTCAGGAGGAAGATATCATGGGAAATATGAAGACGACAGATATTCAGACAATCATGATAACTCTGCGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAGAAGTTATGGAGGATGACTCTGAATATGAAGATGATGAACTGTGTCCACTTGATGATGAGGAAGACAAACGTGTTGGAGAAGTTCAGCAAGATGAAGATGACCATCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAAGAAGATGAACAACTAGCCAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTTTTGCAAACTTATTCCCACCTGTATACAGGTACCTGACTTGTGCTGGTTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTTTTGGCATCCCGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCAATGTCTGGAAATGGCCGTTATCATAAATCCTGCTATAAGGAGTTACATCATCCGAAATGTGATGTTTGCAAAAACTTTATCCCACCAAACGCAGGTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGCCCATCGCACGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCTGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAGATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAAAGACAAGCACTGAACGAAGCCATGGAGGGAGAGAAGAATGGTCATCACCACCTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTGTTCCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGACTGATCCGTCGATGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGCTATTGACTGGATCAATCCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCAGCTCTGGGAACGAAGGTGCATTACCATCATCATCGTCTTCTTCTTCTTCCTCATCCTCCTCCTCACCTTCATCATCTTCATCATCTAAGAAGGGTAAACGTTCTGAATTTGAGAAGAAACTTGGTGAATACTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGCCTTAAAAGGACCCTTGACCATATCCGAATGACTGGTAGTTTTCCATATTGA 1602 0.4232 MGWFTKLLKGSNRKHSGGRYHGKYEDDRYSDNHDNSADDLTEIEKEEIDRAIALSLSEADPKGKEVMEDDSEYEDDELCPLDDEEDKRVGEVQQDEDDHHAQIQQDEDKNLDEFQLEEDEQLARAIQESLSIGSPPRSDTDSLFQPFANLFPPVYRYLTCAGCNAEIGSGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNGRYHKSCYKELHHPKCDVCKNFIPPNAGGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSSSGNEGALPSSSSSSSSSSSSSPSSSSSSKKGKRSEFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00588 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 246 - -
Vimu11g00588 533 Gene3D Cysteine Rich Protein 158 218 - -
Vimu11g00588 533 SMART uim 43 62 IPR003903 -
Vimu11g00588 533 SMART uim 117 136 IPR003903 -
Vimu11g00588 533 MobiDBLite consensus disorder prediction 83 108 - -
Vimu11g00588 533 SMART lim_4 159 211 IPR001781 -
Vimu11g00588 533 PANTHER PROTEIN DA1-RELATED 2 3 533 IPR045218 -
Vimu11g00588 533 MobiDBLite consensus disorder prediction 53 108 - -
Vimu11g00588 533 MobiDBLite consensus disorder prediction 450 475 - -
Vimu11g00588 533 MobiDBLite consensus disorder prediction 450 480 - -
Vimu11g00588 533 CDD LIM_DA1 160 212 - -
Vimu11g00588 533 Pfam LIM domain 160 214 IPR001781 -
Vimu11g00588 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 185 - -
Vimu11g00588 533 ProSitePatterns LIM zinc-binding domain signature. 160 194 IPR001781 -
Vimu11g00588 533 MobiDBLite consensus disorder prediction 1 38 - -
Vimu11g00588 533 Pfam Protein DA1 309 528 IPR022087 -
Vimu11g00588 533 ProSiteProfiles LIM domain profile. 158 218 IPR001781 -
Vimu11g00588 533 MobiDBLite consensus disorder prediction 18 38 - -
Vimu11g00588 533 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Vimu11g00588 533 FunFam Protein DA1-related 1 154 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00588 Vimu-Chr11 6268787 6271986 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g00588 DA1-like 1.2e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00588 - - gmx:100806605 966.452