Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00585 ATGGAAGTGAAAGACGGCGGCATGAATGAGAATGTGGATGAAATTGAGGAAAGAGGAGGCGAGGGAGAGGATGATGATGAAGATGATGAGCAAGATCTTAGCATGGGAATAGCAACACCCTCTTCTTCCCTTCCTTCTATTATTTCTCACTCCAAGACATACCAGCAACACCATTCCAATTCTATGTCCCAAGATTACCATCACCAAGGAATCTTCAGCTTCCCGAATGGGTTCCAGAGATCGGCTACAACCATGAGTCACCAAGACCCTCACCAACAACAGCAGCACCAGCAGCTTCGTAGGGACAAAGTGAGGGTGCAGGGCTTCGAGCCACAGCAAACTTTGGTTCCCATAGAGGAAGACGAACCGGGAAGCCTCCCGGTATACGAAACTGCAGGGATGTTATCAGAAATGTTTACTTTTCCTCCCGGTGCCGCCACAGAATTATTGGAACAACAGCATCAAACACAACAACAGCAATCAATGACGACGACTTTTCGGTCGTCGGCAAGAGCAGTAGGCAGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGCTAACGGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATGGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAACATAGTTCAGCATCAGCATCATCATCATCACCACAACCACCATCATCACCATCAGATGTCAAGCATTAATGCAGACTCGGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCGCCTCCTTCTTCCACTCTCCACATGTTACTTCCCACGTTTCCTCCGGGCTCAGGAGGGTCTTTTGGTCAATTCACGTGGCTCCCTGACACTGCTCAAGATGGAGGAGGACCCAGTACGGTTGTGGAAGGCCCCGGTCACGGTCAAGGACTTTCCTTATCCTTGTCGTCCTCCTTAGAAGCTGCGAAAGCGGAGGAACTTAGGATGGGGGATAGTGGGTTTTTGTATTACAATCAAGCTAGTGGAGGACCCTCTTCATATAAGAGTGCTCTCGGGGGTCATCACCACCAAGCATTGTTGGGACAGACCCATCAGGGGCATGTTGGCTTTGCGGCATCATCGTCCACATCATCCTTAGGTGTTGTCAACGCCTTGAGGAATTCAAAGTATATCAAGGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGACAACTCTCAAACCCTAGCTCCAATCTTGGAGGTAGTGGCGGCGGCGGCGGCGGTGCTTCCTCGTCTTTATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGCATTGAAACCCATTGTTCACATCTCAGATGACCGGGTAGAGGTAGATCGGAGATACAGTCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTGATGGGTTTTGGTGCTGCTGTGCCATACACAGCACTTGCGCAAAAAGCAATGTCTCGTCACTTTAGGTGTCTAAAGGATGCCATAACAGCGCAACTGAAGCATAGTTGTGAGCTGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGGTTGACCAAAGGAGAGACCCCAAGGCTCAAGATGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCACCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGGGTGAAATGTGGTATGTTAGACTTACGAGAGGAGAAAAGGCAGTTAATGATTGCGAGACTGTGAAGGAGAGGGACAATTCTCACGCCCACGAAGGGACAGAAAGAAAGGTTTCATACTCAGCTAAGGGTACAGAAAGCTGGGTGTCTCTTTATACGGTTAAGGCAAGGACTCTGATGTCATTTTCTGGTCTCTTTCTCAGGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCAAGGGTTCGGTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGGGCAGAAGAGGAGAGAGAGAGAAACCAAAGTAGCAGCAATAACAGTGGCCACCAACTGGCACAAACCCCAACGCCCTCCACCACGGCATCGACAGCAACAGCGCCACCACCGCCTCCAACAACATCGACAGCGACGACACCACCAACAGCCAAAAGATCCGACACCGAAAGCGACCCTTCACTCGCTCCAATAAATAACAACAGGCCACTGGGAGCCTTCTCGGAAACACAACCCAACTCCTCAACCACCGCCACTGCCTCTGAGGTGGCGCCGCCCTCCGAACTTCCCCGGTCGATGGGGGCTGATGACTCGTGCCGGCACGGTAGCCTCGTTGCGGCGGAGTTTGGGTCTGGTCCTGGCGCTTCTGACATTGGTTCGACACTGATTAGGTTTGGGACCACCGCAGGTGACGTGTCACTGACACTAGGGCTACGCCACTCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATCTAA 2673 0.5088 MEVKDGGMNENVDEIEERGGEGEDDDEDDEQDLSMGIATPSSSLPSIISHSKTYQQHHSNSMSQDYHHQGIFSFPNGFQRSATTMSHQDPHQQQQHQQLRRDKVRVQGFEPQQTLVPIEEDEPGSLPVYETAGMLSEMFTFPPGAATELLEQQHQTQQQQSMTTTFRSSARAVGSGSEWYGNRQGMLTGLGPLGDSKNHHHGSVNSRDSSSSNIVQHQHHHHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTVVEGPGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSALGGHHHQALLGQTHQGHVGFAASSSTSSLGVVNALRNSKYIKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGGASSSLSKDVPPLSAADRIEHQRRKVKLLTMLDEALKPIVHISDDRVEVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPGEMWYVRLTRGEKAVNDCETVKERDNSHAHEGTERKVSYSAKGTESWVSLYTVKARTLMSFSGLFLRYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEERERNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDPSLAPINNNRPLGAFSETQPNSSTTATASEVAPPSELPRSMGADDSCRHGSLVAAEFGSGPGASDIGSTLIRFGTTAGDVSLTLGLRHSGNMPEKTPFSVRDFGGI 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00585 890 MobiDBLite consensus disorder prediction 1 101 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 1 15 - -
Vimu11g00585 890 Coils Coil 714 737 - -
Vimu11g00585 890 CDD homeodomain 676 712 IPR001356 GO:0003677
Vimu11g00585 890 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 224 738 - -
Vimu11g00585 890 SMART HOX_1 644 715 IPR001356 GO:0003677
Vimu11g00585 890 MobiDBLite consensus disorder prediction 413 442 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 722 736 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 737 755 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 771 815 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 16 33 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 35 93 - -
Vimu11g00585 890 SUPERFAMILY Homeodomain-like 675 718 IPR009057 -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 722 831 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 216 230 - -
Vimu11g00585 890 Pfam Associated with HOX 384 531 IPR006563 -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 413 449 - -
Vimu11g00585 890 ProSiteProfiles 'Homeobox' domain profile. 676 711 IPR001356 GO:0003677
Vimu11g00585 890 Pfam Homeobox KN domain 677 707 IPR008422 GO:0003677|GO:0006355
Vimu11g00585 890 MobiDBLite consensus disorder prediction 187 235 - -
Vimu11g00585 890 MobiDBLite consensus disorder prediction 756 770 - -
Vimu11g00585 890 Gene3D - 587 716 - -
Vimu11g00585 890 SMART prehox3 378 532 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00585 Vimu-Chr11 6193492 6205382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00585 378 890 Homeobox Transcription Factor Family AT2G23760 54.545 9.41e-152 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu11g00585 POX 2.2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00585 - - gmx:100814959 842.802