Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00580 ATGGAGGTGCAGGCTGAGTTATATCCAGAAATCCACCCAATTTGCATCACAGAAATGCAATGTCTGCAAGGAAGAGGAATGCGGAAAGAAGAGGCCCTTTCCATGTGTACCCTTCCTATCCCACCCAACAATGATCTAAGTGATAGAGTCCTTGGTCAAGCTCGCCAAACCAATCATCCTCAGTTGTTTGGCCTCTTCGCGATTGCCTTAATTGCAATCTCGAGAGAGGGCGAATTTGCTTACACGAAAGAGAAACTCGGGCAACAGGACGTGGAAGATTGTTCAACGAAGAATTACACAATTGGGAACAGAGTTGATGAGCTTTTCTGCGAGTCTGATGATGAAAATAAGCTATGCTTAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCAAAATGTGCAAAGGAAGCAATGGATGGAAAGGCACTGTTGGGCAGACCATTGAGGATAAGTATTGCACTTGAGAAGGCCCGAGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATTTGAACAGGCGCTAA 576 0.4427 MEVQAELYPEIHPICITEMQCLQGRGMRKEEALSMCTLPIPPNNDLSDRVLGQARQTNHPQLFGLFAIALIAISREGEFAYTKEKLGQQDVEDCSTKNYTIGNRVDELFCESDDENKLCLVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRPLRISIALEKARGVPVVVPRLSDIGHLNRR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00580 191 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 121 172 - -
Vimu11g00580 191 SMART rrm1_1 98 166 IPR000504 GO:0003723
Vimu11g00580 191 SUPERFAMILY RNA-binding domain, RBD 121 173 IPR035979 GO:0003676
Vimu11g00580 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 170 IPR000504 GO:0003723
Vimu11g00580 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 164 IPR000504 GO:0003723
Vimu11g00580 191 Gene3D - 88 174 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00580 Vimu-Chr11 6141129 6144454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00580 111 171 Eukaryotic Initiation Factors Gene Family AT3G16380 38.571 3.68e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00580 - - pvu:PHAVU_003G2503000 142.51