Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00563 ATGTTCCACCGCAGCACAAAGTTCGCACTGCTTCTCATCATCATCTTCCTTTTCTGTTCAACCGTCGCCCAAACCAGCACCAACTGCCGGCCCAGTTGCGGACAACATTCCCTAAACTACCCTTTTGGGTTCTGTTCTGACAGCAAAGTCAAACTAAACTGCAGCAGCGACAGTACGAAAGTCAAAATCGGCGAGTTCGAGGTTCAGAATATAACCTCTGATAGCATATTCTTGAGTCTTCCGGTGAAGTGCAACCGCAGCTTGGGAGTCATAGACCCTCTTTTCGGTGTCAACTTTGCTCCTACGTTCAACAATAGCTTTCTGTTGCAGGGTTGCAAGTCCAAACAGAATGGCTGCGATATTACCCCATCGAGTTTCGTTGGCGAGCACGGCCCAGTGGAGGGGTGTGACTGGAAAAACAAAAGTGAAGATGTTATTTGCTTCAAGCGGTTGCCGCGTGATAATAGTTCGCGTGAAGATGTGCTCCAGAGTGATTTGAAAGGAATTGGGTGTAGCTTCCTGTTTTCTGCCATTGCTTATGATAAGAATAAAGGAAAAGAGCTTTCGCTCCAATTACAGATGCTTGAGTTGGGGTGGTGGCTCAAAGGGCCGTGTAATTGCTCCAACAATGCATCCTGCACGGTGGTCAAGCTTGCCACAGGAGATCGAGGTTACCGGTGCCGGTGCCATGAAGGTTTCGTAGGCGACGGTTTCAAAGACGGCGATGGCTGCCGCAGTATGGTGTTTGACATCTGGTTGCGGCTTTATGCTTTGAGCAACCAGGTTGGTTTAGTTTATAATACTAGTGTAGGATTGTGCATCGGGAATTTCGGGGATGAGGTAAAGCACATGTCTGCAGTTCCTCAATGCAAACCTTCAACACTATGGCCTGGCAGATGTAGAAAAGCAATCAAAATCGGTGTCCTTGTTGGAGGGGTGATAATTGCGGCTACCCTGGTGGTTGCTCTGTCTCTTGTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGTAAACAAGTTACAGTAAAGCGCTTATTACGAGAAGCTGCGGGCGACTCTACTGTTCCTCTATATCCCTACAAAGAAATAGAAAGAGCCACAAGTTTTTTCGATGAAAAGCATAGGCTTGGAACTGGGGCATTTGGCACAGTTTATGCTGGACACCTTCACAACGATGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAATAGTGTTGACCAAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTGCGCCTCCTAGGTTGCTGCATAGAAGCGGGAGAACAGATACTTGTGTATGAGTATATGCCTAATGGAACACTATCTGAACATTTGCAAAGGGAGAGAGGCGGAATACTTCCATGGACAATAAGACTCACCATTGCTACAGAAACTGCTAATGCTATAGCATATCTCCATTCTGCCATTAACCCACCGATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTACAGTTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGAATGTCAGGAACATCACATATCTCAACCGCCCCACAAGGGACCCCGGGCTATGTTGATCCCCAATACCACCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAACTGCAATGAAAGTGGTTGATTTTTCGCGACCTACAAGTGAAATCAATTTGGCTGCACTTGCAGTTGAAAGGATTAGGAGGGGTTGTCTCGATGATATCATTGATCCCTTCCTTGAGCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTTGAAGTTATCAGACGCAGTGAGTGGGAAGCTTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTTTGTTCATCGCCTCGAATAGGAAGAGAGAATTCATTGGTTGGTGTTAGTTTTGAGAGAGTTGCAGGGCAAGGGAGTGAGACATTGATTGTTCCACCCAAGAATGAAATGTTTTTGCAATCAATGAAGGAAGTGAAGGACAACTCTCCTGTATCTGTGCATGATGCTTGGCTCAGTGGAACTAGCTCACCTTCAACAAATTGCTAG 2205 0.4567 MFHRSTKFALLLIIIFLFCSTVAQTSTNCRPSCGQHSLNYPFGFCSDSKVKLNCSSDSTKVKIGEFEVQNITSDSIFLSLPVKCNRSLGVIDPLFGVNFAPTFNNSFLLQGCKSKQNGCDITPSSFVGEHGPVEGCDWKNKSEDVICFKRLPRDNSSREDVLQSDLKGIGCSFLFSAIAYDKNKGKELSLQLQMLELGWWLKGPCNCSNNASCTVVKLATGDRGYRCRCHEGFVGDGFKDGDGCRSMVFDIWLRLYALSNQVGLVYNTSVGLCIGNFGDEVKHMSAVPQCKPSTLWPGRCRKAIKIGVLVGGVIIAATLVVALSLVCYFTRRRSSWLSKQVTVKRLLREAAGDSTVPLYPYKEIERATSFFDEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDQVINEIKLLSSVSHPNLVRLLGCCIEAGEQILVYEYMPNGTLSEHLQRERGGILPWTIRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMSGTSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFSRPTSEINLAALAVERIRRGCLDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEVIRRSEWEALEETICTASSVGSVCSSPRIGRENSLVGVSFERVAGQGSETLIVPPKNEMFLQSMKEVKDNSPVSVHDAWLSGTSSPSTNC 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00563 734 SUPERFAMILY Protein kinase-like (PK-like) 354 645 IPR011009 -
Vimu11g00563 734 ProSiteProfiles Protein kinase domain profile. 371 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00563 734 Gene3D Phosphorylase Kinase; domain 1 332 446 - -
Vimu11g00563 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Vimu11g00563 734 SMART serkin_6 371 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00563 734 Gene3D Transferase(Phosphotransferase) domain 1 447 664 - -
Vimu11g00563 734 ProSitePatterns Protein kinases ATP-binding region signature. 377 400 IPR017441 GO:0005524
Vimu11g00563 734 FunFam Wall-associated receptor kinase-like 14 338 446 - -
Vimu11g00563 734 FunFam Wall-associated receptor kinase-like 20 447 656 - -
Vimu11g00563 734 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 727 IPR044652 GO:0004672
Vimu11g00563 734 Gene3D Laminin 201 240 - -
Vimu11g00563 734 Pfam Protein kinase domain 372 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00563 Vimu-Chr11 6005147 6008809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00563 3 733 Receptor kinase-like Gene Family AT2G23450 50.599 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu11g00563 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00563 - - gmx:100810861 1061.98