Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00549 ATGCCATCCTCCAACTCCGGCGAGACCCGCCGACAAGCCAAGCCCCAGAGCTCTGCCGGAGCGCCGCCACCTCCAGAGCAAGAAAACCTCCCCTGCCCCCGTTGTGAGTCAACCAACACTAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGTCTTGCCGCCGGTATTGGACCCATGGCGGCACCCTCCGCGATATCCCCGTCGGCGGTGGCAGTCGCAAGAATGCCAAGCGTTCACGCACTCACCACACTGCCACGTCATCCTCCTCCTCCACCATGACTTCACCTCAGGACCACGCTCTTCCTGCATTGGCCCCCGTCCAAACGACCCAAGGAGGGTCCATGCACTTCGTGGACGATGACGTTAATAAACAGAATAACGTGAATGTCTGCGGGAGCTTCACCTCTTTGCTGAACAACACCCCGGGCAATGGGTTTCTCGCCCTCGGCGGTTTTGGACTTGGGCTCGGACACGGGTTCGATGATATGGGCTTTGGGATTGGCAGGTCGGGCTGGGGCTTCCCCGGAATGGTGGATGGTGCCAACATGGGCAGCAGCGTTCCGTCTTCTGGATTGAGCCCGTGGCAGTTAGAGAGTGGCGAAGGTGGGTTTGTTAGTGGAGACTGTTTTTCGTGGCCTGGGCTTGCCATTTCCACACCAGGGAATGGTCTCAAATGA 699 0.5837 MPSSNSGETRRQAKPQSSAGAPPPPEQENLPCPRCESTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHTATSSSSSTMTSPQDHALPALAPVQTTQGGSMHFVDDDVNKQNNVNVCGSFTSLLNNTPGNGFLALGGFGLGLGHGFDDMGFGIGRSGWGFPGMVDGANMGSSVPSSGLSPWQLESGEGGFVSGDCFSWPGLAISTPGNGLK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00549 232 MobiDBLite consensus disorder prediction 89 105 - -
Vimu11g00549 232 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Vimu11g00549 232 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Vimu11g00549 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 151 IPR045174 GO:0003700|GO:0006355
Vimu11g00549 232 MobiDBLite consensus disorder prediction 71 106 - -
Vimu11g00549 232 MobiDBLite consensus disorder prediction 1 32 - -
Vimu11g00549 232 MobiDBLite consensus disorder prediction 1 16 - -
Vimu11g00549 232 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00549 Vimu-Chr11 5828897 5829595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00549 1 232 C2C2-Dof Transcription Factor Family AT3G50410 50.588 3.45e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g00549 zf-Dof 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00549 - - gmx:778095 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00549 11 5828897 5829595 Vimu11g00549 11 5828897 5829595 ECH