Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00546 ATGAAGAACAGTAATAGAAGTGCATATCGGGATTTCGAAGACCGAAAATCTGAAACTACAAAATCAACTTTTCCCACAGGGGAAGTTGTAGCCATAAAGAGAGCTCAAAAGGAGTCAAAGCATGGAACTCAAGAATTCAAAACTGAAATTGAACTCATTTTCCAAGTCCACCACAAAAATCTGGTTAGCTTTGCGGAATTCTGCTTTGAACACGAAGAACAAATTCTAGTTTATGAGTTTGTTGCTGATGGAACTTTGAAGGATGATCTCACATGTATGCATCTTAAATATATCCAATTTGATAGATACAACAAATATTAA 321 0.352 MKNSNRSAYRDFEDRKSETTKSTFPTGEVVAIKRAQKESKHGTQEFKTEIELIFQVHHKNLVSFAEFCFEHEEQILVYEFVADGTLKDDLTCMHLKYIQFDRYNKY 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00546 106 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g00546 106 SUPERFAMILY Protein kinase-like (PK-like) 24 95 IPR011009 -
Vimu11g00546 106 MobiDBLite consensus disorder prediction 1 22 - -
Vimu11g00546 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00546 106 Gene3D Phosphorylase Kinase; domain 1 15 82 - -
Vimu11g00546 106 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 95 - -
Vimu11g00546 106 Pfam Protein tyrosine and serine/threonine kinase 26 92 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00546 Vimu-Chr11 5803489 5804757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00546 21 91 Receptor kinase-like Gene Family AT1G79620 60.563 1.32e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu11g00546 PK_Tyr_Ser-Thr 3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00546 - - vra:106775737 114.775