Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00537 ATGATCCAAGAACTGTTGGGTGGAGCTAGCCTCATAGCACCAGAAAGAAAACCCTCCATTAATGGAGGGGGTGCAGGAGGAGGAGGACTAGGAGGAGGAGTTTTACTCCCAACTGCACCATCTCCCTCTTCTCTTCCTTCTTCCTCAACTAATAATGTTACCCTCACATCCACCACCACCGCTACTACTGCTACCACCACCACCACTACTCCCACATCGGAAAATCAAAACCTCAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCCCGCCACTTTTGCAAGACGTGCCGCCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGTGGCAAAGACAGCCTCAACCAAGATGAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTCTGCTGAGAGCTACTCAGAATCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATCAAGGAAGAAGGGACCCTGATTGGGCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAACCTTAGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGTCTGTTTGGGAGAAGCAATCAAGATCAACAACAAAATGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCAAGAGATTTACCAGAAGCTAAGGTCATCATCGGCTAATAATTATTGCGGTGATAACTCGTCACAAGTGTTTATGGGGAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTATGGAAACAACATCGGTAGCTGGGGGTGAATTCGGATACTGGAACGCTCCAACCTTTTCGTGGTCTGATCTTCCAACAACGAATGGCGCCGGTGCATATCCAAGGAGGTGGTGGAGGCGTGGTGGTGGTCCTAGTGGGCTTTTGCAAGGGTTTCCTGAAATAGCATTAGAGAATCTTGGAATTGGTAATGGGAGGAATCCATCTGCGTCCTTACAGAGAACAGTGAGCACTTATGCTATGCCTGCCTGA 1179 0.4996 MIQELLGGASLIAPERKPSINGGGAGGGGLGGGVLLPTAPSPSSLPSSSTNNVTLTSTTTATTATTTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPSPMSIKEEGTLIGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLFGRSNQDQQQNGGFLLGEHHNSGIQEIYQKLRSSSANNYCGDNSSQVFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNAPTFSWSDLPTTNGAGAYPRRWWRRGGGPSGLLQGFPEIALENLGIGNGRNPSASLQRTVSTYAMPA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00537 392 MobiDBLite consensus disorder prediction 40 79 - -
Vimu11g00537 392 Pfam Dof domain, zinc finger 76 132 IPR003851 GO:0003677|GO:0006355
Vimu11g00537 392 MobiDBLite consensus disorder prediction 14 79 - -
Vimu11g00537 392 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 278 IPR045174 GO:0003700|GO:0006355
Vimu11g00537 392 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Vimu11g00537 392 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00537 Vimu-Chr11 5685199 5687149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00537 47 163 C2C2-Dof Transcription Factor Family AT5G60200 53.333 6.95e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g00537 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00537 - - gmx:778108 488.419