Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00534 ATGGCTATGTTTCTGGATCCTCTCATTGGAAAAGCGTTTGATGAACTGCTGAGCATTGTTAAGGAAAAGAAAGACAGGGCAGTGAAGTTCAGACCCACCCTGGAAAAGTTGCATTCCATCCTCGAAAAAGTAGAACCGATGGCTAGGCAGATAAATGTTCTTATACAGCGATTGAATAAACCAGAATCGCAGAAGCTGATCGAAGAGTTGCAGAAGGGGAAGGAGCTTGTTAATGAGTGCTCCAAAGTTGATTGGTGGAATTGCTGCTATAAGGCCAGCTCCCAAGAGAAACTTCAAGACTTGATCGATTCTATTTCTCTGTACTTTCAATTGGATATGCAAGGAAATATATATGTCATTGGGCTGGAGAGCCAGATGCTGCTGTATGAGATTCACGAGAGGCTTGTGGAGAATCCGAGAAGGATTCAAGGCTTGTGCTCTCCGCCTGAACCCCCAGCTTTCACTGTTGGGCTGGATGTTCATTTGAGGGAGTTGAAGTTCAAGTTGCTGAAGAATCATCATGTGGGGCCAGTGCTCACAGTAACTGGAGCAGGAGGTTCGGGAAAGTCAACGTTGGCCAAGAAGTTTTGTTCTGATGAGGAAGTTAAAGGTGAATTCAAGGACAACATATTCTTCATCTCCTTGGTGGAAGCGCCCAAGTTGAGCACCATAGTGGAGAGACTGTTTGAACACAATGGTTACGAGAAGCTACAGTTTCAAAGTGATGATGATGCAGTTCATCGATTGGAAAATTTGCTAAAACAGATTGGAAAAAACCCCATATTGTTGGTCCTGGACGGTGTTTTGCCAGAGTCAGCATCTCTAGTTGAGAAATTCGTGTTTCAGATCCCAAACTACAAGATTTTAGTGACATCAAGTTTCACAATTGAAGGATTTGGGCAGCCATACGTGTTGAAATCACTGAATGAAGCTGATGCTTTAAACTTATTTCGCCACTCTGCATCCCTGGACCAGACCAGCTCTACGATTCCCGATACTATTGTGAAGAAGATAGCAGAGGGGTGCAGTGGTTCTCCCTTGGCACTTATAGAAACCGGAAAACCTTTAAGTCTTGAAGAACCAGTGGTTTGGCACAACAGGGCGAAGACATTGTCGAGGGGTCACTCTGTTCTTTCTTATAGTTCTAGTAGCGATGGGCTTCTTACTTGCCTCCAAAAAAGCTTTGATGACTTGGATGCTATGCTTGCTGAGAGTTTTACGGACCTGAGCTTATTTCTTGAAGCACAGAAAATACCTGCAGCAGCACTTGTTGATATTTATGCAGAACAGCGTGATGAAGAAGATGACATTGCAATGGAGAATATCCTTAAACTCGTCAAAAGGAACGTGGCTGATCTTGTTGTCACAAGGAATACTACGAGTGGCACAGTTGACTACAATTACCATTATGTTACGCAGCATGGTCTTCTTCGGAACCTAGCCATCCATCAATCAAGAAATTTGCCGACTGAGAAGAAGCATAGGCTAATAATTGACCTCAGAGGGAACAATATCCCCAAATGGTGGACTACACAGAATGAGTATCACATTGCAGCCCACACATTATCCATATCAACTGATGAAGAATTCACTTCAGAGTGGTGCAACTTGCAGCCAAATGAGGTCAAGGTTCTAGTGATGAACCTTAGAGAGAAAAAGCGCTCTCTACCACCATTCATGAAGAAAATGAATAAATTAAAAGTCCTGACAATAACGAATTATGACGTCAATCGTACTGAGTTGGAGAATTTAGAGCTGCTTGATTATCTTTCTGATCTCAAAAGAATCAGGTTAGAGAAGGTTTCAATTCCTTTCCTGAGCAAGACTGGAGTGGCACTGAAGAATCTGCACAAGTTCTCTTTCTTTATGTGCAATGTGAACGAAGCCTTCAAAAACAGCACCATCAATGTTTCTGATGTGCTTCCAAATTTGAAGGAGATGAACATTGATTACTGTGATATGGAGGAATTGCCGGCTGGACTCTCCGATACAGTTTCCTTAAAGAAGCTAAGCATCACAAACTGTCATAAACTTTCAAAACTTCCTACAGGAATTGGAAAGTTGGTGAATTTGGAATCATTGAGGCTTACTTCTTGTACTAAATTAGAAGAGTTGCCAGACACCATCACAAGCCTTCATAAACTGAACTTTCTTGACATCTCTGACTGTGTAAGCCTTAGTATGTTACCAGAAAACATAGGGGAGCTGGGTAGTTTAAAATGGTTGAATTGCAGAGGTTGCAGCAGATTGTCTGAATTGCCATACTCAGTGACGGAGCTTGAGAGCTTAAGAGTGGTAATATGCGATGACGAGAGGGCTGCATTATGGGAACCTATCAGATCCATGTTTAGTGATCTAAAGCTAGAGGTAGTCCTAACTGATTTCAAACTAGATTCTTTTCTTTAA 2406 0.4219 MAMFLDPLIGKAFDELLSIVKEKKDRAVKFRPTLEKLHSILEKVEPMARQINVLIQRLNKPESQKLIEELQKGKELVNECSKVDWWNCCYKASSQEKLQDLIDSISLYFQLDMQGNIYVIGLESQMLLYEIHERLVENPRRIQGLCSPPEPPAFTVGLDVHLRELKFKLLKNHHVGPVLTVTGAGGSGKSTLAKKFCSDEEVKGEFKDNIFFISLVEAPKLSTIVERLFEHNGYEKLQFQSDDDAVHRLENLLKQIGKNPILLVLDGVLPESASLVEKFVFQIPNYKILVTSSFTIEGFGQPYVLKSLNEADALNLFRHSASLDQTSSTIPDTIVKKIAEGCSGSPLALIETGKPLSLEEPVVWHNRAKTLSRGHSVLSYSSSSDGLLTCLQKSFDDLDAMLAESFTDLSLFLEAQKIPAAALVDIYAEQRDEEDDIAMENILKLVKRNVADLVVTRNTTSGTVDYNYHYVTQHGLLRNLAIHQSRNLPTEKKHRLIIDLRGNNIPKWWTTQNEYHIAAHTLSISTDEEFTSEWCNLQPNEVKVLVMNLREKKRSLPPFMKKMNKLKVLTITNYDVNRTELENLELLDYLSDLKRIRLEKVSIPFLSKTGVALKNLHKFSFFMCNVNEAFKNSTINVSDVLPNLKEMNIDYCDMEELPAGLSDTVSLKKLSITNCHKLSKLPTGIGKLVNLESLRLTSCTKLEELPDTITSLHKLNFLDISDCVSLSMLPENIGELGSLKWLNCRGCSRLSELPYSVTELESLRVVICDDERAALWEPIRSMFSDLKLEVVLTDFKLDSFL 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00534 801 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 797 IPR039203 GO:0050832
Vimu11g00534 801 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 115 IPR008808 -
Vimu11g00534 801 Gene3D - 139 296 IPR027417 -
Vimu11g00534 801 Gene3D Ribonuclease Inhibitor 490 781 IPR032675 -
Vimu11g00534 801 SUPERFAMILY RNI-like 553 766 - -
Vimu11g00534 801 PRINTS Disease resistance protein signature 342 356 - -
Vimu11g00534 801 PRINTS Disease resistance protein signature 710 726 - -
Vimu11g00534 801 PRINTS Disease resistance protein signature 255 269 - -
Vimu11g00534 801 PRINTS Disease resistance protein signature 178 193 - -
Vimu11g00534 801 Pfam NB-ARC domain 161 396 IPR002182 GO:0043531
Vimu11g00534 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 408 IPR027417 -
Vimu11g00534 801 Gene3D - 307 408 IPR042197 -
Vimu11g00534 801 ProSiteProfiles RPW8 domain profile. 1 147 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00534 Vimu-Chr11 5659872 5663332 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00534 636 742 WRKY Transcription Factor Family AT4G12020 36.449 1.87e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00534 - - vra:106755496 1230.7