Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00522 ATGCCATCAAAACTTTTCCACCCTCCAACCCTTCATTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTGCACCCTCATCACTACCTCCTAATTTCTCCTCCGTTCTGGGTCAGCCCCTCTTCAGGGCGCGCACGCCGCCCCTAGTGCCTACCATTCACTATGGCACTAAGTGTTTAGAAAACTACGGTTCCTCCTTGGACTCCTGGAACTCTACCACTCCTCCTTGCACCGATGGCCATGCCAACTGGCATGGCATTCTTTGCTACCAAGGAAAAGTGTGGGGCGTGAAGCTTGAGAACATGGGGCTCCAAGGCCTCATTGACATAGATTCTTTAAAGGCCTTGCCTTACCTAAGAACCTTGAGTTTCATGAACAATAGTTTCGAGGGTCCATGGCCAGAAATTCACTACTTGGTTGGTCTCAAGTCTGTTTACCTTTCCAATAACAAGTTTTCTGGGGAGATTCCTTATAGAGCCTTCGAGGGGTTGAAGTGGTTGAAGAAAATTTATCTGTCCAACAACCAGTTCTCCGGTTACGTTCCAACTTCCCTCACGGTGTTGCCGAGACTCATAGAGCTCAGGTTGGACGGGAATGAGTTCACTGGTGCCATTCCCCGTTTTCATCCCCTCAACAGATTGAGAGTGTTTAATGTTGCTAATAATCAGTTGCAGGGTCAGATTCCTTCCACCGTTAGTAGAATGCCGGCTTCTTCCTTTTCTGGTAATGAAAGGTTATGTGGAGCCCCATTGGAGTCATGCATCTCGAAGCCCTCCACTGCGAGCGTCGTTGGGGCAGTGGTGGTTGTTTGCATGGCGGTGCTTGTGATTGGAATAGTGGTGCTCATGATTCACAGAAAACAGAACGGAGCGTGTGGAGCGAAATTGGGGAATCCACCCGGCAGCACCAGCAAAGGGCGTTTGAGGGACGTGGGTGATCAGAGCCGCAGGTCCGCAGGGTCAATGAGCTCCACAGACACCAGAAAAGCTGAACACTTGAGACTCTCTTTTCTGAGAGATGACAGAGAAATGTTTGACCTGCAAGAGTTGCTGAGAGCTTCTGCTGAGATTTTGGGAAGTGGCTGCTTCAGCTCTTCATACAAGGCTGCTTTGGTGAATGGGCCAACAATAGTGGTGAAGAGGTTCAAGCAGATGAACAATGTGGGGAAGGAAGAGTTCCAAGATCACATGAGAAGGCTAGGGAGGTTGAGTCATCCTAATTTGCTTCCTCCAGTGGCTTACTATTACAGAAGAGAAGAGAAGCTCGTGGTCACAGACTATGTTCAGAATGGAAGTCTCGCTGTTCGCCTTCATGGGCACCAAGCCCTGGGAGAACCAAGCCTTGAGTGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTATACAGGGACATGCCAAGCCTAATTGCCCCACATGGAAATCTGAAGTCTTCTAACGTTCTGTTGAGCCAATCTTTTGAGCCTCTTCTGACAGACTATGGCCTAGTTCCAATGATAAACCAGGAATTGGCTCAGGACATCATGGTGATATACAAGTCTCCTGAGTATTTGCAACAAGGAAGGATCACAAAGAAGACTGATGTGTGGTGTCTTGGAATACTGATTCTGGAGATCCTAACTGGGAAGTTCCCAGCAAACTTTTTGCAAAAGGGTAAAGGGAGTGAGGTGAGTTTGGCAAGTTGGGTGGATTCAGTGGTGCCAGAAGAGTGGACCAATGCTGTGTTTGATCAAGAAATGGGGGCAACTAAGAACAGTGAAGGAGAGATGGGGAAGCTTTTGAAGATTGCTTTGAATTGTTGTGAGGCGGATGTGGATAAGAGGTGGGATTTAAAGGAAGCTGTAGAGAATATTCTTGAGGTGAAGCAAAGGGATGGTGATCAAGAAAATTTTTTAACTTCTTATGCTAGTGATGCAGAATTGATTTCTTCAACTTGA 1953 0.4716 MPSKLFHPPTLHSSSSSSSSSSSSAPSSLPPNFSSVLGQPLFRARTPPLVPTIHYGTKCLENYGSSLDSWNSTTPPCTDGHANWHGILCYQGKVWGVKLENMGLQGLIDIDSLKALPYLRTLSFMNNSFEGPWPEIHYLVGLKSVYLSNNKFSGEIPYRAFEGLKWLKKIYLSNNQFSGYVPTSLTVLPRLIELRLDGNEFTGAIPRFHPLNRLRVFNVANNQLQGQIPSTVSRMPASSFSGNERLCGAPLESCISKPSTASVVGAVVVVCMAVLVIGIVVLMIHRKQNGACGAKLGNPPGSTSKGRLRDVGDQSRRSAGSMSSTDTRKAEHLRLSFLRDDREMFDLQELLRASAEILGSGCFSSSYKAALVNGPTIVVKRFKQMNNVGKEEFQDHMRRLGRLSHPNLLPPVAYYYRREEKLVVTDYVQNGSLAVRLHGHQALGEPSLEWPIRLKIVKGIAKGLEYLYRDMPSLIAPHGNLKSSNVLLSQSFEPLLTDYGLVPMINQELAQDIMVIYKSPEYLQQGRITKKTDVWCLGILILEILTGKFPANFLQKGKGSEVSLASWVDSVVPEEWTNAVFDQEMGATKNSEGEMGKLLKIALNCCEADVDKRWDLKEAVENILEVKQRDGDQENFLTSYASDAELISST 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00522 650 Gene3D Phosphorylase Kinase; domain 1 317 427 - -
Vimu11g00522 650 FunFam pollen receptor-like kinase 1 321 427 - -
Vimu11g00522 650 Gene3D Ribonuclease Inhibitor 210 254 IPR032675 -
Vimu11g00522 650 Gene3D Ribonuclease Inhibitor 56 208 IPR032675 -
Vimu11g00522 650 MobiDBLite consensus disorder prediction 293 327 - -
Vimu11g00522 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 66 630 IPR046959 -
Vimu11g00522 650 FunFam Pollen receptor-like kinase 1 428 637 - -
Vimu11g00522 650 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Vimu11g00522 650 ProSiteProfiles Protein kinase domain profile. 352 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00522 650 SUPERFAMILY Protein kinase-like (PK-like) 356 624 IPR011009 -
Vimu11g00522 650 MobiDBLite consensus disorder prediction 8 31 - -
Vimu11g00522 650 MobiDBLite consensus disorder prediction 1 31 - -
Vimu11g00522 650 SUPERFAMILY L domain-like 74 236 - -
Vimu11g00522 650 Pfam Protein tyrosine and serine/threonine kinase 356 622 IPR001245 GO:0004672|GO:0006468
Vimu11g00522 650 Gene3D Transferase(Phosphotransferase) domain 1 428 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00522 Vimu-Chr11 5600792 5603350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00522 65 649 Receptor kinase-like Gene Family AT5G35390 53.519 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu11g00522 PK_Tyr_Ser-Thr 4.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00522 - - gmx:100804368 951.044