Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00515 ATGGATCGGGCGGCGTTGACGGTCGGACCGGGCATGGACATGCCGATCATGCACGACAGTGACCGTTACGATCTGGTCCGTGACATCGGGTCCGGAAATTTCGGCGTGGCCAGGCTGATGCAGGATAAACAGACCAAGGAACTCGTTGCCGTCAAGTACATCGAGAGGGGCGATAAGATTGATGAAAATGTGAAGAGGGAAATTATTAACCACAGGTCTCTGAGACATCCCAATATTGTTAGGTTTAAAGAGGTAACCACATCGGCCACAATTTTCTGTGACCGCGTTGATGGCTACACTGTTAAGGTTTTTGGAGTGGTAGGGGCTGCTATTGTTATTTTAACACCTACTCATCTAGCGATTGTAATGGAATATGCCTCTGGAGGCGAGCTCTTTGAGAGAATCTGCAATGCTGGGCGTTTTACTGAGGACGAGGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTTAGTTATTGCCATGCTATGCAAGTATGTCATCGGGACTTAAAGCTGGAAAACACTTTGTTGGATGGAAGCCAGGCACCTCGTTTGAAGATATGTGATTTTGGGTACTCCAAGCGTTTCAGGTGTGAGTTCCATGCTGTTTATATTTTACTGGGAGTTTCTTCAGTGCTACATTCACAACCGAAGTCAACTGTGGGGACTCCTGCATATATTGCTCCAGAAGTATTGCTGAAACAAGAGTATGATGGCAAGCTTGCAGATGTCTGGTCGTGTGGAGTGACCCTGTATGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGAGAATTCTTAGTGTCCAATATGCCATTCCTGATTGTGTTCAAATATCTCAAGAGTGTCGCCACCTTATTTCAAGGATTTTTGTTTTTGACCCAGCAGAGAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCTGCGGATCTGATGGATGAGAGGATAATGAGTAATCAATTTGAAGAGCCAGACCAACCCATGCAGAGCATTGATACGATCATGCAGATAATTTCAGAAGCTACGGTACCAGCAGCTGGGACCTATACTTTTGACCAGTTAATGGGGGAGCAAATTTATGACTTAGAATCTGAATCTGATGCTGAATCTGAGCTTGATATAGATAGCAGTGGGGAGATAGTCATATCAAATGGAGAGCATCTGAATATTGTGGTTGGCATTTTCAGCATGAAGAAGTATGTGGTGCCCGCATTTTCTGTAGATTAG 1281 0.4473 MDRAALTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVTTSATIFCDRVDGYTVKVFGVVGAAIVILTPTHLAIVMEYASGGELFERICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSQAPRLKICDFGYSKRFRCEFHAVYILLGVSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKLADVWSCGVTLYVMLVGAYPFEDPNEPKDFRKTIQRILSVQYAIPDCVQISQECRHLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDERIMSNQFEEPDQPMQSIDTIMQIISEATVPAAGTYTFDQLMGEQIYDLESESDAESELDIDSSGEIVISNGEHLNIVVGIFSMKKYVVPAFSVD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00515 426 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Vimu11g00515 426 Gene3D Transferase(Phosphotransferase) domain 1 126 328 - -
Vimu11g00515 426 Pfam Protein kinase domain 23 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00515 426 PANTHER SERINE/THREONINE KINASE 22 351 - -
Vimu11g00515 426 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Vimu11g00515 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vimu11g00515 426 SMART serkin_6 23 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00515 426 FunFam Serine/threonine-protein kinase SRK2E 126 329 - -
Vimu11g00515 426 ProSiteProfiles Protein kinase domain profile. 23 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00515 426 SUPERFAMILY Protein kinase-like (PK-like) 21 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00515 Vimu-Chr11 5573972 5578569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00515 22 417 CBL-interacting serine-threonine protein kinases AT2G26980 33.898 1.40e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu11g00515 Pkinase 4.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00515 K14498 - gmx:100806949 665.996