Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00514 ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACGGTTCGTCAGATTCTTGGCCAGGTTGCTCAGAACGAAGATGGGTCTCAGAGAATGGCCACGCTTGAGGATTTTCTCCAAAAGTTCGAAGATGAGAAGAGAAAGATCGAGTCTTTCAAACGTGAACTTCCTCTTTGCATGGTCCTCGTGAACGATGCTATTACTAAATTGAAAGAGGAGATAAACGGAGGTGTGAGAATGCAAGAAGAACCCGTGGTTGAAGAATATATGCCACTTTTGAAAACCAATTCTGAAGGAAGTGAGACTTTAAACATGGGTAAGGAACGCAGTAACATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGAGGACAGAAGAAGACGATCGATGTGTCCCCGACAATCCAAATCAACCACAGAATGAGAGCAACAAGAGTAGAGGAGCAGGAGCAGCAGCAGCATTAAATGGAAACAATCGTGTCTTAAAAAGAGTGATGAGTGAAGAGAAGGGGGTGTCACAGGTTCCTAGCGTTGGTTTGATGAGACCAGTGTTTGAATTGAATGATAGAAAAGCAGAAAGTAGTAATGAACATGGGTCGTCGTCCTTGATTGCAACAAGCTCATTAGAGATAAAGGGTCAAGCACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAACTTCATAGGCGATTTGTCGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTGTTCGGTTGAGGTAGCTAATGGTGGGTTATGCCTTATGGTAAAGGATAATAATAAATCAAAAGGGAACTTATTATCACAATCTGGGTCTCCACAAGGTCCTCTTTTCTTAAGAGGGTCTGGACGCAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCACAATTGGAAAGGTGCTCTTCACCACCAACCAGAAGCTGAACTTCTATGA 1089 0.4408 MELSLDLSLAFVPGRTVRQILGQVAQNEDGSQRMATLEDFLQKFEDEKRKIESFKRELPLCMVLVNDAITKLKEEINGGVRMQEEPVVEEYMPLLKTNSEGSETLNMGKERSNMKNWMNSVRLWNVESKPRTEEDDRCVPDNPNQPQNESNKSRGAGAAAALNGNNRVLKRVMSEEKGVSQVPSVGLMRPVFELNDRKAESSNEHGSSSLIATSSLEIKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVCSVEVANGGLCLMVKDNNKSKGNLLSQSGSPQGPLFLRGSGRNSMDTEEDEQSDCHNWKGALHHQPEAELL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00514 362 FunFam Myb family transcription factor 229 287 - -
Vimu11g00514 362 MobiDBLite consensus disorder prediction 128 159 - -
Vimu11g00514 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 349 IPR044787 GO:0003700|GO:0006355
Vimu11g00514 362 Coils Coil 37 57 - -
Vimu11g00514 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 287 IPR017930 -
Vimu11g00514 362 MobiDBLite consensus disorder prediction 313 345 - -
Vimu11g00514 362 MobiDBLite consensus disorder prediction 204 232 - -
Vimu11g00514 362 MobiDBLite consensus disorder prediction 197 233 - -
Vimu11g00514 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 230 285 IPR006447 GO:0003677
Vimu11g00514 362 Pfam Myb-like DNA-binding domain 232 283 IPR001005 -
Vimu11g00514 362 Gene3D - 229 287 - -
Vimu11g00514 362 SUPERFAMILY Homeodomain-like 228 288 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00514 Vimu-Chr11 5554035 5555867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00514 1 305 G2-like Transcription Factor Family AT2G03500 36.778 2.91e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu11g00514 Myb_DNA-binding 8.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00514 - - gmx:100794220 406.757