Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00513 ATGCAAAAACCCATGTCGGTTCCACAGGTTTTGTCTGCTTCTGTGGCATCCATAGATTTGACTCTCAACTCTAAGAACACAAAGAAGAAGTTGTGGAAATCCTCTTCCTCTTGCTCTAGCCTCCATTTCACACCACACTCTGTGGTAGAAGAAGTACAAGACATGACTCCGTGCGGCGCATGCAAGTACCAACGGCGGAGGTGCGGATCGGAGTGCGTGATGCGGTCGCATTTCCCGGCTGAGAACATTCAGCGGTTCGCGTACGTGCACCATGTGTTTGGCGGGGGCAACGTGAGTAACATTTTGAAGTCGACGTCGCCGGATTTGCGCAAGTGGGTGGCGAGGGCGCTGGCGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGATGCGTGGGGTTGATATGGGAGCAGCAGGAGACTCTGGGAATCCTGAAAGAGAAGCTGGAGAAAGCGAAAAGGGAACTGGCCCAATACGTGGGCCCAGATGTTGTGCTACAGATGATTGGGCAGTGTTCCTCCGATCCGCATGCGAAGACGGTGAACCTTATGGCTCCTCTCTCTGCCCCCGTTGATGATTTTGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAATCTTCTTCTTCACGCCGCCTGCCACCGCCAGCTAACGCTAAGGGTAAGACTATTGCTCCTCCTTCTTGA 690 0.5391 MQKPMSVPQVLSASVASIDLTLNSKNTKKKLWKSSSSCSSLHFTPHSVVEEVQDMTPCGACKYQRRRCGSECVMRSHFPAENIQRFAYVHHVFGGGNVSNILKSTSPDLRKWVARALAYQAEARVRDPVHGCVGLIWEQQETLGILKEKLEKAKRELAQYVGPDVVLQMIGQCSSDPHAKTVNLMAPLSAPVDDFDLSSWDPFPAWESSSSRRLPPPANAKGKTIAPPS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00513 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 55 172 - -
Vimu11g00513 229 MobiDBLite consensus disorder prediction 206 229 - -
Vimu11g00513 229 Pfam Lateral organ boundaries (LOB) domain 57 154 IPR004883 -
Vimu11g00513 229 ProSiteProfiles LOB domain profile. 56 157 IPR004883 -
Vimu11g00513 229 Coils Coil 136 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00513 Vimu-Chr11 5541644 5545291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00513 56 167 AS2 family AT2G23660 50.000 2.37e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu11g00513 LOB 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00513 - - gmx:102663028 174.481