Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00512 ATGTCGTCGCTGAATTCGCCGTGCGCCGCGTGCAAGCTTCTGCGCCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTATATGGCTGTGTGGGAATAATTTCGTTTCTACAGCAACGGCTCCGCCAAATCCAGATGGAGCTTCAGAGCGCGAAGAAGGAATTGTCCACTTATGTGAGTCCTCAGACTATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCATCAGCTGATATTGTCGTGCCTCCTTCGCATCAACCTCTGTTCAATCATGTTGGCAACAACATGGCGCCGCAGCAGATTTTGGTTGGACATGGCGGTGGCCAGACGGTGGTTCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCTCAGCAGATAGCTCTTGCAACTAGGGAGCAGCAACAGATGTTTAGAAACTATGAGCAGAAAGTGTTCGGTGGTTTTGAACCTAGTAATGGTGGATTTGGGAGTCAAGGAGAATTGTTGTCTCCTTTGGCTCTTGGAAATTTTGGTAATGTTGGCGCTTACCAAATGCAGCAGCTAGGGGAACAACATCTGATTGAGTCACAGTTGCTCCTCTCCCCACAGCAGGGACAGCCCCATCAGCAGCAACAGTGTGAAAGTGAGGATACAAAGAATGTGCTTGATTTTTCAATCAAGTAG 819 0.5336 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGIISFLQQRLRQIQMELQSAKKELSTYVSPQTMQILLANPGMVPSADIVVPPSHQPLFNHVGNNMAPQQILVGHGGGQTVVRDPQQQDFQEAQQIALATREQQQMFRNYEQKVFGGFEPSNGGFGSQGELLSPLALGNFGNVGAYQMQQLGEQHLIESQLLLSPQQGQPHQQQQCESEDTKNVLDFSIK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00512 272 Coils Coil 86 106 - -
Vimu11g00512 272 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vimu11g00512 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 187 - -
Vimu11g00512 272 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00512 Vimu-Chr11 5539212 5540030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00512 1 120 AS2 family AT5G66870 73.333 1.43e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu11g00512 LOB 5.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00512 - - vum:124826574 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00512 11 5539212 5540030 Vimu11g00512 11 5539212 5540030 ECH
Vimu7g02844 7 24033713 24037784 Vimu11g00512 11 5539212 5540030 PCT