Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00510 ATGGAGATAAGGTTCGTGAAATTGAGGATAGAAGAAGGGTATTGGTCAAGGCTATGGTTGTCGTTTCTTTCTGGAACCGCTATGGTGCCAAAGCGAACGATGGCTGTGGTTAAACCTTTGCATTGCGCTTCCAATAGGATGTCCTCTTTTCGATCCGCATTATTTACGCAGCCATGCGCTGGTTACCCACGCTTTCCTTCACGCCTTCCAGTTCCTCCTCGTCTTCCTCAGCCGCCTCCGCCGACCACCGCCGCAAGGTCTGGCTGTTCGGTAGTTCATCCAAGAAACGCTCCTGCCATGCCGAGAACGATGCCAGGTGGCACGATGACGATTCACCACCCTTCCCTTCCCCCGGCACACCTCACCCCTTGCCCCTGCCGGAGCTCGCCGCTTCCTCCGCTGTGCTCCGTAGAGACGGCGAATGCCGTCTTCCCTCGCCCAAGGATGCTGCTGCAGCCACCACCTCCACCGGCTGTCGGATGCGGAGTTCTCAGTGGTGAGTTTGCTGACCTATTTGACCGAATTTTGTATTGTAACAGTGTTTTTGCTGGCCAAGACACGAGAAAGAATATGGAACAGGCTGAAACTAGGTCATGGAGAATGCTGCATCAAGATTCGTGTGGTTGTTGTGAATGTGCTCGAGATAATAGTAATACTAATAATAGTAACTTCGCGAGCATCCCTCGTAGGAGCAGTTTTTCAGGTATTCCCTTTGCAAGTCCTTCAATAACGAGTCCTCAGAAAACAAAAAATGGTGAATCTGTGCCATATTATTATGCGAGTCTCAAAGGAAATCAATTCTGGTCTGCACCAGAAATGTCTACCTGTGAAACGGGGTTGCTACCTCCTGCCTTCTTTGATTTATCCGTGTTGGGCACAGAAACTTCTCCCTCTCCCACCTCCCATCAAAGTCCACAGAGGAGAAGTCCGGGCCAACACACCAGAACCTTGAGTGGACCTCTATCTCCTTTACATTCCAAGTTATCACTTGAAATCTCAATGGTGCGCCGTGAAAGTACTGCCCCTCCTGTCAGTGTTCACCCCTTGCCCCTGCCTCCTGGGGCTCCCCTGCCCTCTCCATCGTCAGCTGGTACATTTTCCAATGCTAGATCAGAATCATTGCCAATGAAAAACCAATGGCAGAAAGGGAAACTTATCGGACGAGGGACATTTGGAAGTGTTTATGTTGCCACCAATAGGGAAACCGGTGCATTATGTGCAATGAAGGAAGTGGAAATGTTTCCTGATGATCCAAAATCTGCGGAGTCTATTAAACAGTTAGAGCAGGTTGAGGGCCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATACGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGACATATTCTATCAGGATTGGCTTATTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGACTCCGCTGGAGTAGTTAAGCTTGCTGATTTTGGGATGGCTAAGCATCTAAATGGGTTCGAAGGTAATCTATCTTTGAGGGGAAGTCCGTACTGGATGGCTCCAGAGGCTGTGATGCAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTCTGGGTTGTACCATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCTCTGTTTAAGGTTATGAAGGAAACCCCTCCTATTCCTGAAACATTGTCGCCCGAGGGTAAAGATTTCTTGAGGTGCTGCTTTATACGAAATCCAGCAGAGCGGCCAGCAGCTGCAGTTTTACTAGAACATCGATTTTTGAAAAACTCTCAACAGCCTGATGTTTCATCTCCCACTCAATTGTATAATGGAACAGGCTTCATGGACAAACCACGTAGTCCCATTAAACAATTTGAATATAAACATGATCAGTTGTCGTCAATCTCCTGTGCCAAAATTGCCAAGGTTAAAGCAGCTGACAGGCGTGGATTTCTCATTTCTTCGTTGGAAATTCTTCCGGCATCCTTGGACCAATAA 2067 0.4702 MEIRFVKLRIEEGYWSRLWLSFLSGTAMVPKRTMAVVKPLHCASNRMSSFRSALFTQPCAGYPRFPSRLPVPPRLPQPPPPTTAARSGCSVVHPRNAPAMPRTMPGGTMTIHHPSLPPAHLTPCPCRSSPLPPLCSVETANAVFPRPRMLLQPPPPPAVGCGVLSGEFADLFDRILYCNSVFAGQDTRKNMEQAETRSWRMLHQDSCGCCECARDNSNTNNSNFASIPRRSSFSGIPFASPSITSPQKTKNGESVPYYYASLKGNQFWSAPEMSTCETGLLPPAFFDLSVLGTETSPSPTSHQSPQRRSPGQHTRTLSGPLSPLHSKLSLEISMVRRESTAPPVSVHPLPLPPGAPLPSPSSAGTFSNARSESLPMKNQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEMFPDDPKSAESIKQLEQVEGRFYIYLEYVHPGSINKYVRDHCGAITESVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLNGFEGNLSLRGSPYWMAPEAVMQKDNSPDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPPIPETLSPEGKDFLRCCFIRNPAERPAAAVLLEHRFLKNSQQPDVSSPTQLYNGTGFMDKPRSPIKQFEYKHDQLSSISCAKIAKVKAADRRGFLISSLEILPASLDQ 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00510 688 SMART serkin_6 380 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00510 688 MobiDBLite consensus disorder prediction 339 369 - -
Vimu11g00510 688 Pfam Protein kinase domain 381 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00510 688 Gene3D Transferase(Phosphotransferase) domain 1 372 672 - -
Vimu11g00510 688 SUPERFAMILY Protein kinase-like (PK-like) 372 641 IPR011009 -
Vimu11g00510 688 MobiDBLite consensus disorder prediction 73 92 - -
Vimu11g00510 688 ProSitePatterns Protein kinases ATP-binding region signature. 386 409 IPR017441 GO:0005524
Vimu11g00510 688 MobiDBLite consensus disorder prediction 345 359 - -
Vimu11g00510 688 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 299 630 - -
Vimu11g00510 688 ProSiteProfiles Protein kinase domain profile. 380 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00510 688 MobiDBLite consensus disorder prediction 291 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00510 Vimu-Chr11 5512049 5518001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00510 221 655 MAP Kinase Kinase Kinase AT5G66850 58.471 2.34e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu11g00510 Pkinase 2.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00510 - - gmx:100790701 773.467