Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00508 ATGGTGAACCCTAAATGCTTCTTGGACATTAGTATCGCTGGCGAGTTAGAGGGTAGAATCGTTATCGAACTTTTTCACGATGTGGTTCCCAAAACTGCGGAGAATTTCAGGGCCCTTTGCACTGGCGAAAAGGGCATAGGACCCAACACCAATGTCCCCCTTCACTATAAGGGAGTATGTTTTCACCGTGTGATCAAGGGGTTCATGATCCAAGGTGGCGACATCTCCGCTGGCGACGGCACCGGAGGGGAATCTATATACGGCCTGAAGTTCGAGGATGAAAACTTGGAGCTGAAGCACGAGAGAAAGGGGATGCTTTCCATGGCCAATGCGGGACCCAACACCAACGGTTCTCAGTTCTTCATCACCACCACACGCACCCCTCATTTGGACGGTAAACATGTCGTGTTCGGAAGAGTTGTTAAAGGAATGGGCGTTGTTCGCTCAGCAGAACACGTTGTTACTGGGGAAAACGACCGACCCACTCAGACTGTAGTAATCGAGGATTGTGGGGAAATTCCCGAAGGGCAAGATGATGGAGTTGTTAACTTCTTTAAGGATGATCTTGATGTCAAACCTGATGAGCTTTCTTGGTGGATGAGTGCTGTGGATTCTATCAAGGCTCTGGGGAATGAGCAGTACAAGAAGCAAGATTATAAGATGGCATTGAGAAAGTATCGCAAAGCGTTGCGCTATTTGGATGTGTGCTGGGAGAAGGACGACATTGACCAAGGTCAGTGTCTCTGCATTTTGGCTCTGGCTAGTGAAATATATTGGTACTTCTCTGCTTCATCCTTTCTATCTCACGTCTCTGCTCTTTCTTTTTACTATGCAGAGAACAGTGCTTCATTAAGGAAGACAAAATCTCAAATCTTTACCAATAGTTCTGCTTGTAAATTGAAAATAGGTGATCTACAAGGAGCACTACTGGATTCAGACTTTGCAATGCATGATGGAGCTAATGCAAAAGCTCTGTTTCGAAAAGGCCAGGCGTATATGTTACTCAATGACCTGGATTCTGCTGTTGAAAGCTTCAAGAAAGCGTTAGAGTTGGAGCCTAATGATGGAGGGATTAAAAAGGAGTATGCCACTGCCAGGAAGAAGGTTGCTGATAGACGTGATAGAGAGAAAAAAGCTTATTCTAAAATGTTCAAGTAG 1158 0.4542 MVNPKCFLDISIAGELEGRIVIELFHDVVPKTAENFRALCTGEKGIGPNTNVPLHYKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENLELKHERKGMLSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGRVVKGMGVVRSAEHVVTGENDRPTQTVVIEDCGEIPEGQDDGVVNFFKDDLDVKPDELSWWMSAVDSIKALGNEQYKKQDYKMALRKYRKALRYLDVCWEKDDIDQGQCLCILALASEIYWYFSASSFLSHVSALSFYYAENSASLRKTKSQIFTNSSACKLKIGDLQGALLDSDFAMHDGANAKALFRKGQAYMLLNDLDSAVESFKKALELEPNDGGIKKEYATARKKVADRRDREKKAYSKMFK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00508 385 ProSiteProfiles TPR repeat profile. 322 355 IPR019734 GO:0005515
Vimu11g00508 385 Pfam Tetratricopeptide repeat 322 355 IPR001440 GO:0005515
Vimu11g00508 385 SUPERFAMILY Cyclophilin-like 1 175 IPR029000 -
Vimu11g00508 385 Gene3D - 1 179 IPR029000 -
Vimu11g00508 385 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Vimu11g00508 385 CDD cyclophilin_ABH_like 4 171 - -
Vimu11g00508 385 Gene3D Tetratricopeptide repeat domain 203 385 IPR011990 GO:0005515
Vimu11g00508 385 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Vimu11g00508 385 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Vimu11g00508 385 ProSiteProfiles TPR repeat region circular profile. 322 355 - -
Vimu11g00508 385 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Vimu11g00508 385 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 171 IPR002130 GO:0000413|GO:0003755
Vimu11g00508 385 SUPERFAMILY TPR-like 203 382 IPR011990 GO:0005515
Vimu11g00508 385 SMART tpr_5 203 236 IPR019734 GO:0005515
Vimu11g00508 385 SMART tpr_5 322 355 IPR019734 GO:0005515
Vimu11g00508 385 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Vimu11g00508 385 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vimu11g00508 385 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Vimu11g00508 385 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Vimu11g00508 385 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Vimu11g00508 385 FunFam peptidyl-prolyl cis-trans isomerase D 255 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00508 Vimu-Chr11 5495591 5502994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00508 18 167 U-box Gene Family AT5G67530 47.682 3.95e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00508 K05864 - gmx:100803839 645.966