LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g00505	ATGGGTCTCTGCACTTCGAAGCCTCATGCAAATCCCACACTCTCCTCTTCTCCCAATTCCAACACCCACTTCACAGACACCAATGCCGACGAACAATTACCCAAAAATCCTATTCCCACTCCAAAAAAATCTCCCCTTTTCCCCTTCTACACTCCCAGCCCGGCCCACCACTTTTTCTCCGGCAAGTCTCCGGCGCCAGCGACTCCCCGCCGCTTCTTCAAGCCTCCGTCGCCAGCCAAGCACATTCGGGCCGTGCTGGCCCGTCGTCATGGCTCTGTTAAGCCCAACGAAGCTAGCATCCCGGAAGATGAAGTGCTTGCTCTTGACAAGAACTTCGGATTCTCCAAACAGTTTGAGCAAAAGTTTGAGGTTGGGGACGAGGTTGGACGAGGACACTTTGGTTATACTTGTGCTGCCAAGTTCATTAAGGGCCAACTCAGAGGCCAACACGTCGCCGTCAAGGTCATCCCTAAAGCCAAGATGACAACTGCAATTGCAATTGAGGATGTGAGGAGGGAGGTGAAGATATTGAGGGCTTTGACAGGACATAAAAATCTGATTCAGTTCCACGATGCGTATGAGGATAATGACAATGTCTACATAGTAATGGAGTTGTGCGAAGGAGGGGAGCTTTTGGACAGAATATTGTCGAGAGGAGGAAAATACACGGAGGAAGATGCTAAAGCTGTCATGATACAAATACTAAATGTTGTTGCGTTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTCAAACCAGAGTTTGGTTATTTGGCTTTGTCTTATCAAATCTTATCGAGCATGACTTCTAACGACGGGTTATTTCTGGGTCAGAATTTCTTATTCACATCAAAAGAAGAGAACTCTGAGCTGAAGGCCATTGACTTTGGATTGTCGGATTTTGTCAAACCAGATGAAAGGCTTAATGACATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTTTGCATAGAGCTTACAGTACAGAGGCTGATATCTGGAGTGTTGGTGTGATTGCTTATATTTTACTATGTGGCAGTCGTCCATTTTGGGCACGGACTGAATCTGGGATATTCCGTGCCGTATTGAGAGCTACTCCAAGTTTTGATGAACCTCCATGGCCTTCTCTATCAGATGAGGCAAAGGATTTTGTTAAGAGACTTCTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCGCAGGCATTGAGTCATCCGTGGATTAAAAATTATAAGGACGTAAAAGTGCCTTTGGATATTCTAGTGTTCAAGCTCATGAAGACATACATGCGTTCTTCCTCTCTACGAAAAGCAGCTTTAAGAGCTTTGTCTAAGACATTGGCTACCGAAGAGCTGCAGCATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAACTAACACCATTAGCTTGGAAAATATCAAAGCGGCCTTAATGAAAAATGCAACAGATGCCATGAAGGAATCACGCATTCCAGATTTCCTGGCATCACTTAATGCGTTGCAATATAGAAGGATGGCTTTTGATGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAGCTTGAAGCACTTGACCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAACAGAGCTATAGTCATTGAGGAACTAGCTTCGGAGCTTGGGCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTTCACGACTGGATTAGGCACACTGATGGAAAGTTGAGCTTCCTTGGATTTGTTAAGTTATTGCATGGTCCATCTCGAAGTCTTGCAAAACCTCACTAG	1800	0.4528	MGLCTSKPHANPTLSSSPNSNTHFTDTNADEQLPKNPIPTPKKSPLFPFYTPSPAHHFFSGKSPAPATPRRFFKPPSPAKHIRAVLARRHGSVKPNEASIPEDEVLALDKNFGFSKQFEQKFEVGDEVGRGHFGYTCAAKFIKGQLRGQHVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFHDAYEDNDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVMIQILNVVAFCHLQGVVHRDLKPEFGYLALSYQILSSMTSNDGLFLGQNFLFTSKEENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADIWSVGVIAYILLCGSRPFWARTESGIFRAVLRATPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALSHPWIKNYKDVKVPLDILVFKLMKTYMRSSSLRKAALRALSKTLATEELQHLKEQFALLEPNKTNTISLENIKAALMKNATDAMKESRIPDFLASLNALQYRRMAFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKPH	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g00505	599	Gene3D	Transferase(Phosphotransferase) domain 1	211	421	-	-
	Vimu11g00505	599	ProSitePatterns	Protein kinases ATP-binding region signature.	128	154	IPR017441	GO:0005524
	Vimu11g00505	599	Gene3D	-	426	587	-	-
	Vimu11g00505	599	FunFam	-	279	425	-	-
	Vimu11g00505	599	FunFam	CDPK-related kinase 3	114	275	-	-
	Vimu11g00505	599	FunFam	CDPK-related kinase 1	445	517	-	-
	Vimu11g00505	599	Pfam	Protein kinase domain	122	254	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu11g00505	599	Pfam	Protein kinase domain	278	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu11g00505	599	SUPERFAMILY	Protein kinase-like (PK-like)	120	438	IPR011009	-
	Vimu11g00505	599	Gene3D	-	448	517	-	-
	Vimu11g00505	599	ProSiteProfiles	EF-hand calcium-binding domain profile.	450	485	IPR002048	GO:0005509
	Vimu11g00505	599	MobiDBLite	consensus disorder prediction	1	44	-	-
	Vimu11g00505	599	ProSiteProfiles	Protein kinase domain profile.	122	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu11g00505	599	PANTHER	SERINE/THREONINE-PROTEIN KINASE	108	574	-	-
	Vimu11g00505	599	FunFam	CDPK-related kinase 1	115	210	-	-
	Vimu11g00505	599	CDD	STKc_CAMK	121	407	-	-
	Vimu11g00505	599	Gene3D	Phosphorylase Kinase; domain 1	115	210	-	-
	Vimu11g00505	599	SUPERFAMILY	EF-hand	436	590	IPR011992	-
	Vimu11g00505	599	MobiDBLite	consensus disorder prediction	8	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g00505	Vimu-Chr11	5462173	5466760	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g00505	1	599	EF-hand Containing Proteins	AT3G50530	70.732	0.0	907

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Vimu11g00505		Pkinase	1.4e-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g00505	K13412		-	gmx:100803313	1067.37