Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00484 TTGAAACTGAAAGGGGACTATCTAATAAGGCTGAAAATGGTGGTTACTGATGAAAGGAACCGCGATCGTGCGAACAGGAGGGAGGTGGTGGAGCTACCACAATATGATCAAGCTGTAACTGTAGCATATTATGAGGAGGAGTTGCATGGTGGCGTACCTCTATCTCACTTCTCCAGAATCTCTCCTTTAAACATGGATATACAAAACAAGGTGGTGGAGAAGAAATACAAAATATTGAATAATAGTCCAACCAAGCAAGCAACGTCTGCTGAGGCTCAGAAGTTTTCAAGCGTGGTATTTGCTTCCAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGTGAGGTCATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCTGAATTTCCTAGTTTTGTGAAGTCGTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCGGATAAGGATACAACAATCATTTTGGAAGATGAATCTGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGACGGGATTGAGCGCTGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTCCAATTAGTTGAACCAACCAAATTTAAGAAAAATTTAGGAGGCCATAAGGCAACAGTTGTGGAGCTTAGTTGGATCAGGCAACTTGGCAAAGATAACGTGGATACGGATCTTACATGCAATAGCTCAAAGAGAAAATATGGCAAATCTGTCCCACTTGAAATCCAAAAGAAAAAAAAGGCAAACTTGTCGAGATTGAGACCTAAGGTTATGCCATCAGTAGAACAATCTGAAAATGATAGCGAGGAAGCTCTCTCAGAAGTTATGGAGGAGTTTAGAATGCTTGAGTTTGAAGATGTCAGAGGCTTTGAAAATTTTAGCATCATAGTTGATGGAGTGTCAATAGATGCTGAGTTCCCTGACGATGTTAGAAACAAGTACTACAGGCTATGTTGTAGTCAGCATGCATTTCTTCATGAGAATCTCATCAAGGGCATGAACTATAAGCTGGTGGCTGGAATTATATCTGAAACCGTCAACATTGCCGATGCCATAAAGGTTAGTATGCTATGCACCCCACGTTTGGAATATGTTAACTGGGACAAAATATTGCTATCCTTCGAGCATCTGGGTATGAATGTTGAGTTTCTAAGGATCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGGAAAATGATGTCTCAGAGGCCAAAAAGTACTTGGCCTCTAGAAACGAGTACAGTCGGGCAGATGATGAAATAAGGAACATAGAAGAGAAGCTCCAAGAATTGAAAGGAGCATGTAATGGTTTTGGTGCTTATCTTGGTAGTTTGAAGGGCAAAGCTGAAAATTATCATAATAAATTTCGAAGAGAGGTCGATGCACCTTGGTGA 1476 0.4153 MKLKGDYLIRLKMVVTDERNRDRANRREVVELPQYDQAVTVAYYEEELHGGVPLSHFSRISPLNMDIQNKVVEKKYKILNNSPTKQATSAEAQKFSSVVFASSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTIILEDESGKEYNTKFIACKTGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKKNLGGHKATVVELSWIRQLGKDNVDTDLTCNSSKRKYGKSVPLEIQKKKKANLSRLRPKVMPSVEQSENDSEEALSEVMEEFRMLEFEDVRGFENFSIIVDGVSIDAEFPDDVRNKYYRLCCSQHAFLHENLIKGMNYKLVAGIISETVNIADAIKVSMLCTPRLEYVNWDKILLSFEHLGMNVEFLRIRLRRLVSIAYEENDVSEAKKYLASRNEYSRADDEIRNIEEKLQELKGACNGFGAYLGSLKGKAENYHNKFRREVDAPW 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00484 491 SMART B3_2 140 233 IPR003340 GO:0003677
Vimu11g00484 491 Coils Coil 434 461 - -
Vimu11g00484 491 Gene3D - 119 227 IPR015300 -
Vimu11g00484 491 CDD B3_DNA 138 224 IPR003340 GO:0003677
Vimu11g00484 491 SUPERFAMILY DNA-binding pseudobarrel domain 135 224 IPR015300 -
Vimu11g00484 491 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Vimu11g00484 491 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 84 224 IPR044837 -
Vimu11g00484 491 Pfam B3 DNA binding domain 140 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00484 Vimu-Chr11 5190757 5194662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00484 117 224 B3 DNA Binding Superfamily AT5G42700 49.074 1.25e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu11g00484 B3 1.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00484 - - vra:106768002 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00484 11 5190757 5194662 Vimu11g00484 11 5190757 5194662 ECH