LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g00474	ATGTCACAGCGTTCGACCCCAGCGCCGTTTTTGACGAAGACGTATTTGTTGGTGGACGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAAACGGGAAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTAAGGATTTGCTTCCCAAATACTTCAAACACAACAATTTCTCCAGCTTCGTCCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAGAAGGAGCTCCTCACCGAGATCAAGCGGCGGAAGACGGTGATGCAATCTCCGGCGACCGGAAAATCCGGCGGAGGGAACATCTCAGCGTCGCACTCCGGCGGCGACGACATGGGTTCGACGTCGACGGGGTCGGTGGAGGGTGCAACGACGACCCAGTGCGCGGATTTAACAGGCGAAAATGAAAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGTGCGAAGAAGCAGTGCAACGAACTGGTGTCGTTTCTGAGGGAGTCACTGAAGGTGTGCCCCGATGTGATAAACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCGAGGATGCGGTGCGTTTTGAATGTATTGGTGATGATGATGACGAAAATGTGGTAGGTGAGTACGAAGGCAACGTGGATGATGAGAGCGGTGGAGAAAGTTTGAAACTGTTCGGTGTTTGGTTGAAGGGCGAAAATGGGAATGAAAAAGGTAGTAACTGGCGCAAGAGAGGGCGCGATGAGGCTATTGGTGGCAGTGCGAAGGAGCTGAAAACCCTTGTCTAG	822	0.5304	MSQRSTPAPFLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLTEIKRRKTVMQSPATGKSGGGNISASHSGGDDMGSTSTGSVEGATTTQCADLTGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLKVCPDVINRIIRQGTCGSSEDAVRFECIGDDDDENVVGEYEGNVDDESGGESLKLFGVWLKGENGNEKGSNWRKRGRDEAIGGSAKELKTLV	273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g00474	273	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Vimu11g00474	273	Gene3D	-	2	101	IPR036388	-
	Vimu11g00474	273	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vimu11g00474	273	SUPERFAMILY	"Winged helix" DNA-binding domain	6	99	IPR036390	-
	Vimu11g00474	273	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vimu11g00474	273	Coils	Coil	142	169	-	-
	Vimu11g00474	273	MobiDBLite	consensus disorder prediction	101	136	-	-
	Vimu11g00474	273	MobiDBLite	consensus disorder prediction	104	136	-	-
	Vimu11g00474	273	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vimu11g00474	273	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vimu11g00474	273	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vimu11g00474	273	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vimu11g00474	273	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	194	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g00474	Vimu-Chr11	5096838	5099314	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g00474	2	260	HSF	AT4G36990	53.585	1.78e-83	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vimu11g00474		HSF_DNA-bind	7.7e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g00474	K09419		-	gmx:100801897	384.8