Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00466 ATGGATGTGGACATAGTGAAGGCTTCCGCGTGTGACACCACCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACACAGAAGCCGACATGTTATCGAGTGGAAGCTCCTCTACAAGTGTTTCCAACATTTTCAATAACGGAACTCCACCGACTCTCGTTGATCCACCACCGCCAAATGTTCTCAATTTTTCCAACAATGACAACAGCTATATCCAGCAACCTATGACACCCTCTCTCCACCCCCCACAGCCTACCACCACTTCCTTCCCCCACCCTTCTGAGAAGAAAAACTCTATGGCGGCGATGAGGGAAATGATATTCAGAATAGCGGTGATGCAACCTATTCACATAGACCCTGAATCCATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAAGATAAGGATTCTGCAGAGATTAGTCCCAGGTGGCACCAAGATGGACACGGCTTCGATGCTGGACGAGGCCATTCACTACGTGAAGTTCTTAAAGAAACAGGTCCAGACACTGGAACAGGCTGGGGCAAGTAGACAACACAATCACAATACTGTTGCTGCTGTCGGTTTTCCAATAGGGATGTCTAACTCCAACAACGTTAACTATTCTTCTTTGTTAATGAAGGGTTGCCAACCTTGTCAAGTTTTCGGTTCTACTTCCAAACAATTGCTCAGCTAA 780 0.4731 MDVDIVKASACDTTNMDVMAMMMQMEKFSEFCDPFYTTTPPYTEADMLSSGSSSTSVSNIFNNGTPPTLVDPPPPNVLNFSNNDNSYIQQPMTPSLHPPQPTTTSFPHPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRQHNHNTVAAVGFPIGMSNSNNVNYSSLLMKGCQPCQVFGSTSKQLLS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00466 259 CDD bHLH_AtIND_like 150 206 - -
Vimu11g00466 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 210 IPR036638 GO:0046983
Vimu11g00466 259 SMART finulus 155 204 IPR011598 GO:0046983
Vimu11g00466 259 FunFam BHLH transcription factor 152 217 - -
Vimu11g00466 259 Pfam Helix-loop-helix DNA-binding domain 159 198 IPR011598 GO:0046983
Vimu11g00466 259 Coils Coil 188 208 - -
Vimu11g00466 259 MobiDBLite consensus disorder prediction 46 73 - -
Vimu11g00466 259 Gene3D - 148 220 IPR036638 GO:0046983
Vimu11g00466 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Vimu11g00466 259 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 42 249 IPR045843 GO:0003700|GO:0006355
Vimu11g00466 259 MobiDBLite consensus disorder prediction 46 66 - -
Vimu11g00466 259 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00466 Vimu-Chr11 5007327 5008106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00466 116 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 93.478 4.69e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g00466 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00466 - - gmx:100800816 332.028