Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu11g00466 | ATGGATGTGGACATAGTGAAGGCTTCCGCGTGTGACACCACCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACACAGAAGCCGACATGTTATCGAGTGGAAGCTCCTCTACAAGTGTTTCCAACATTTTCAATAACGGAACTCCACCGACTCTCGTTGATCCACCACCGCCAAATGTTCTCAATTTTTCCAACAATGACAACAGCTATATCCAGCAACCTATGACACCCTCTCTCCACCCCCCACAGCCTACCACCACTTCCTTCCCCCACCCTTCTGAGAAGAAAAACTCTATGGCGGCGATGAGGGAAATGATATTCAGAATAGCGGTGATGCAACCTATTCACATAGACCCTGAATCCATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAAGATAAGGATTCTGCAGAGATTAGTCCCAGGTGGCACCAAGATGGACACGGCTTCGATGCTGGACGAGGCCATTCACTACGTGAAGTTCTTAAAGAAACAGGTCCAGACACTGGAACAGGCTGGGGCAAGTAGACAACACAATCACAATACTGTTGCTGCTGTCGGTTTTCCAATAGGGATGTCTAACTCCAACAACGTTAACTATTCTTCTTTGTTAATGAAGGGTTGCCAACCTTGTCAAGTTTTCGGTTCTACTTCCAAACAATTGCTCAGCTAA | 780 | 0.4731 | MDVDIVKASACDTTNMDVMAMMMQMEKFSEFCDPFYTTTPPYTEADMLSSGSSSTSVSNIFNNGTPPTLVDPPPPNVLNFSNNDNSYIQQPMTPSLHPPQPTTTSFPHPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRQHNHNTVAAVGFPIGMSNSNNVNYSSLLMKGCQPCQVFGSTSKQLLS | 259 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu11g00466 | 259 | CDD | bHLH_AtIND_like | 150 | 206 | - | - | |
Vimu11g00466 | 259 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 153 | 210 | IPR036638 | GO:0046983 | |
Vimu11g00466 | 259 | SMART | finulus | 155 | 204 | IPR011598 | GO:0046983 | |
Vimu11g00466 | 259 | FunFam | BHLH transcription factor | 152 | 217 | - | - | |
Vimu11g00466 | 259 | Pfam | Helix-loop-helix DNA-binding domain | 159 | 198 | IPR011598 | GO:0046983 | |
Vimu11g00466 | 259 | Coils | Coil | 188 | 208 | - | - | |
Vimu11g00466 | 259 | MobiDBLite | consensus disorder prediction | 46 | 73 | - | - | |
Vimu11g00466 | 259 | Gene3D | - | 148 | 220 | IPR036638 | GO:0046983 | |
Vimu11g00466 | 259 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 149 | 198 | IPR011598 | GO:0046983 | |
Vimu11g00466 | 259 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 42 | 249 | IPR045843 | GO:0003700|GO:0006355 | |
Vimu11g00466 | 259 | MobiDBLite | consensus disorder prediction | 46 | 66 | - | - | |
Vimu11g00466 | 259 | MobiDBLite | consensus disorder prediction | 89 | 111 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu11g00466 | Vimu-Chr11 | 5007327 | 5008106 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu11g00466 | 116 | 207 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G67060 | 93.478 | 4.69e-49 | 160 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vimu11g00466 | HLH | 1.7e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu11g00466 | - | - | gmx:100800816 | 332.028 |