Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00465 ATGGATTGGGTTCGTGGAGACGCCGTCGGTCGAGGAGGCTTCGCTACCGTTAGTTTAGTCATTCCGACTACCAATCCCTCTCGGTTTCCATCTTTAACAGCCGTCAAGTCCTCCCAGGCACTCACTTCGTGTTGGCTCAAGAACGAAAAACACGTGCTCGATCAGCTAGCTTCTTGTCCGAGAATCATTCGCTGTTTCGGAGATGACTACAGTTTCGAGAATGGTGTTGAGTATTACAATTTATTCCTCGAATATGCCACCGCCGGGACTCTCGCAGACAAGGTAAACAATTGCGGAGGCTGGATTCCCGAGCCTCAGGTTAGGCGTTATACGAGGTCCATCTTGGAAGGTTTGAATCACATACATCAAAACGGGTTTGTCCACTGCGACATAAAGCTTCAAAACATCCTCATATTTGACGACGGGGAAATCAAGATTGCAGATTTCGGTCTGGCGAAAGAGGCAGGGGAGATAAAACAGAGGAAGAGTGAATGCAGGGGGACTCCGCTGTTTATGTCGCCGGAGCAAGTGGTTGACGGGGAGTGTGAGTCGCCCGCAGATATATGGGCTCTGGGGTGCGCAGTTGTGGAGATGGTGACCGGGAAACCGGCGTGGAAGGTGGAGAAGGGGTCGAGTATGTGGTCGTTGATGCTTCGGATTGGGGTGGGAGAAGAGACTCCCGAGATACCTGAGAATTTGTCGGAAGAAGGGAAGGATTTTATGAAGAAGTGTTTTGTTAAGGATCCTAGAAAGAGGTGGAGTTCAGAGATGCTTTTGAAACATCCTTTTGTTTCTGATTACACTGTTTCATTTAAGCGCGTTCACGAATCGCCCAGAAGTCACTTCGATTTCCCCGACTGGGTTTCTAGTATGACTTCTTCACTTCCCAGCTCGCCGGAATCTCAATCGCCGTGGAATTTTGACGAGTCCCGTTTGGAAGGTTTCTTGACGGCGGAGGAGCGGCTCCGTCAGATATCAACCGTTGATCGGGCGGCGAATTGGTCAGAATCAGATGGTTGGAGTAGTGTTAGGTGA 1035 0.4995 MDWVRGDAVGRGGFATVSLVIPTTNPSRFPSLTAVKSSQALTSCWLKNEKHVLDQLASCPRIIRCFGDDYSFENGVEYYNLFLEYATAGTLADKVNNCGGWIPEPQVRRYTRSILEGLNHIHQNGFVHCDIKLQNILIFDDGEIKIADFGLAKEAGEIKQRKSECRGTPLFMSPEQVVDGECESPADIWALGCAVVEMVTGKPAWKVEKGSSMWSLMLRIGVGEETPEIPENLSEEGKDFMKKCFVKDPRKRWSSEMLLKHPFVSDYTVSFKRVHESPRSHFDFPDWVSSMTSSLPSSPESQSPWNFDESRLEGFLTAEERLRQISTVDRAANWSESDGWSSVR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00465 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 299 - -
Vimu11g00465 344 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
Vimu11g00465 344 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00465 344 Gene3D Transferase(Phosphotransferase) domain 1 2 330 - -
Vimu11g00465 344 CDD STKc_MAPKKK 2 264 - -
Vimu11g00465 344 FunFam Mitogen-activated protein kinase kinase kinase 17 2 291 - -
Vimu11g00465 344 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00465 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vimu11g00465 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vimu11g00465 344 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00465 Vimu-Chr11 4983633 4984667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00465 1 344 MAP Kinase Kinase Kinase AT5G67080 48.901 5.81e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu11g00465 Pkinase 7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00465 - - gmx:100798607 561.222