Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00460 ATGTCTTCTTCCTCCTCTTCCACACACGACCAAATCTCCCTTCCCCTTCCTCACACTCTTCTTCCTTCTTCCCTCACAACCCTCCACGGTAACCCCCCACGCAATCCCATCCCCATCTCCATGCTTCACTTCTGCACCTCCAAAACTCCACAACATAATGCACTACGAGATGGGATCTCGCCCTACAACCCTTCTTCTGCTGCCGACGTCTCTTCTTCCTCGCTGCCACTCAATATTCACAATGAAACCGATTACTACGACTGCGACAGCGAGGAGTGTGAAGCGTTGGTAGAAGAAGTTCCAATTCCATCCAAGTGCTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCGGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGGAGTAGGATCAATGAAAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCCAACAAGACTGATAAGGCTTCGATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTCTGCATCCTATGTTCTTTCCAGAAGGTTTGCAACCCCAGCAATTGTCTCAGATGAGAATGGATTCAAGTGAAGAAAACAGATATATCCCTTCAAACACTACTGCTACTCTCCCTATGCAACAAGAAAACCCCATGCCCTATTCATCCAATATGCCTAACAAACAAATTGTGGCAGATCAGCCATCCATGTCCACCCCATCATATATATTCAACTCAGAAACTTCTTTTAGACTGGAATCTCATATTTCTGACAGTATAAGATCATTTCAACACACTGGTTTTTCTGAGATATGCAGAGAAGACATATTGCAGCACCAACATTTAAGTGCAAACAATTCAGATACCAACCCATTAGTTTCTTCTCAAGGCGCATTGGCTACAGCATCAGTTTCCTTTGATATGCAAAAATCTGCAGTTAAAGACAGCAGCTCTTTAGGAAACTGCATCCCTGGAAGTGATCAATCTAGACTGATGTTGAGAAATAATGGGGAACATACACATGAAATCCTTCTTGATTTCTCATTGGAGTTTCTATGCGTATATGCTGCTCAATTTATTGCTTCTTGTAGATAG 1113 0.4277 MSSSSSSTHDQISLPLPHTLLPSSLTTLHGNPPRNPIPISMLHFCTSKTPQHNALRDGISPYNPSSAADVSSSSLPLNIHNETDYYDCDSEECEALVEEVPIPSKCFRSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMFFPEGLQPQQLSQMRMDSSEENRYIPSNTTATLPMQQENPMPYSSNMPNKQIVADQPSMSTPSYIFNSETSFRLESHISDSIRSFQHTGFSEICREDILQHQHLSANNSDTNPLVSSQGALATASVSFDMQKSAVKDSSSLGNCIPGSDQSRLMLRNNGEHTHEILLDFSLEFLCVYAAQFIASCR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00460 370 CDD bHLH_AtPIF_like 118 179 IPR047265 -
Vimu11g00460 370 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 73 276 IPR031066 -
Vimu11g00460 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 177 IPR036638 GO:0046983
Vimu11g00460 370 SMART finulus 123 172 IPR011598 GO:0046983
Vimu11g00460 370 FunFam Basic helix-loop-helix transcription factor 112 175 - -
Vimu11g00460 370 Coils Coil 156 176 - -
Vimu11g00460 370 MobiDBLite consensus disorder prediction 107 129 - -
Vimu11g00460 370 Gene3D - 112 176 IPR036638 GO:0046983
Vimu11g00460 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Vimu11g00460 370 Pfam Helix-loop-helix DNA-binding domain 121 167 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00460 Vimu-Chr11 4928687 4932488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00460 81 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 75.207 6.49e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g00460 HLH 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00460 - - vun:114177198 506.138