Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00459 ATAGAGCACCCTGAACTATTTGGGACATCGGGATCCGCGGGCCTGAGTCTTGAAACGATAACTCAATACATGGAGCGTCAAACTTTCTTGGCTGTTGATGGAGATGATTCAGAAGAAAATAAAGAAAAATGCTCCATTTGTCTGGAAGAATTTTGCAACGGAGAGGATATTGGGAAGCTGCATTCTTGTGCGCACAAGTTTCACTTTGATTGCATCAAAACTTGGCTGAACCACAAGAACCGTTGCCCCGTATGCAGAAGAACTGGGTTGGAAACGTCTAATGACCAAAATGTAGGAGGTAAAGCAGCAGATGCAGCTGTGGTTCACGATGAAGGTGACAGTGCGTAG 348 0.4511 IEHPELFGTSGSAGLSLETITQYMERQTFLAVDGDDSEENKEKCSICLEEFCNGEDIGKLHSCAHKFHFDCIKTWLNHKNRCPVCRRTGLETSNDQNVGGKAADAAVVHDEGDSA 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00459 115 CDD RING-H2_PA-TM-RING 44 86 - -
Vimu11g00459 115 SUPERFAMILY RING/U-box 37 96 - -
Vimu11g00459 115 SMART ring_2 44 85 IPR001841 -
Vimu11g00459 115 ProSiteProfiles Zinc finger RING-type profile. 44 86 IPR001841 -
Vimu11g00459 115 MobiDBLite consensus disorder prediction 91 115 - -
Vimu11g00459 115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 89 IPR013083 -
Vimu11g00459 115 Pfam Ring finger domain 43 86 IPR001841 -
Vimu11g00459 115 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 12 90 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00459 Vimu-Chr11 4927244 4927715 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00459 12 92 C3H Transcription Factor Family AT2G15530 40.964 1.71e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00459 - - vra:111242030 197.593