Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00457 ATGAACCCTCATTTTGAAGGTGGCTCAGCTGGACAAGGTAATGCAAGCAATCAAAATTATCGTAGGCCTCACCTTTCTAGTGAAACACATGAGAGACTTCTTCCCTTATTTCCTCTCTTTGCTACTGAGGAAGCGTTTCCGGAGCCAGAAGTGAATCTCCCTCAACAAGGTGCCGACAACATTGGTGCCACAACTGATGTTCCACTTCAGGAAACCCCTAATGTTGTAGCACCGGAATCAAACATTTTCTCTTCAAGGCCCCTTGCTGGAAATCCTCTGGAAAATGTAGACTTGTGTCTGCACGTTGGTTTCAGCCATCAGGCTCCAGCAATATCTTCTGCTGCGCTTCCAAGTTCAAATCTTGCACGTAGCGTGCATGGAAGCAACTCAAACTCAGTAGGCATTCCAAGAAAAAGAGGTTCTGGAGAATTTCATCGGGGTGAAAGTTCAAACATGGGTGAAGGGACAGGAGAGGTCAAAAGACTTGCTACCGAGTCTCAGGTGAGAGCTAACAACAATGTGAACCCGTCACCACAATCACTTTCTGTGGTGCAACAACAGCCTCAATTCCTCCGTGGCCACCATGTTAATCCAAACAATGAAGGGACACCTTTTCTTCCACCCAATACGCCTGACGGGACGACTAATACTGATGATGAAAGAAGAGGTTATCATGCTCCGATACCAAGCCAAGCCAACGGAGCCTCATCACATTCCCAACTGTTTCCTCTGCAACCCTCACATTCCGTTCGGCCTCTATCTTTTCTCAGTAATTCATTCATGTCCAGTTCTGCCCCCAGCGTTAACAACCTAACCGTGAGGAATGCTCCTAACTCAATATCCTCTCCGTGTCCTCACGCTAGAGTCGATAATATGATTCCATTTTATGAACATAGAAATGACATGATTGGTCCTTTAGTTACATCCACTTATCGACCAAACGGGTCTTACGTTGATATTGATCGAGATACTACTAGAAGGGCTCTCCTTTATGGTCTCCGTCAGTTCGAACCCCCGGAACCACTGCAATTACTACCTGGAATTATGGGCAGTGGTGGCAGAGTTAGTAATGCTGGAGCCAATACGTACCACCCTCTGCGTGATTATGATAGCGCTACAGCTTGGTTTCTTCCACAGGGCTCACGAGGAACGAACCATTCTGCTCCGCCAAGTAGTTCTGGCACTCAGAACCATCATAGGCCAATACCACAAATTCCTCCTCTGGAATCACTAAGAGAGCTTCCATCTGAGATTGAGCACCCTGGAATATTTGGGATGTCGCAAGCATTCACGGGACTGAGTCTGGAAACGATAACGCAGTTCATGGAGCGTGAGATTTTCTTGGTTGATGGAGATGACTCAGAAGAAACTAAAGAAAAATGCCCCGTCTGTCTGGAAGAATTTTGCAGGGGAGAGGATATTGGGAAGCTGCATTCGTGTGTTCACAAGTTTCACTTTGATTGCATTAAAGAGTGGCTCATGCAGAAGAATCTTTGCCCCGTCTGCAGAAGAACCGCGTTGGAAAGGCCTAATGACCCAAGTCTTACTATATACTCTTGA 1560 0.4647 MNPHFEGGSAGQGNASNQNYRRPHLSSETHERLLPLFPLFATEEAFPEPEVNLPQQGADNIGATTDVPLQETPNVVAPESNIFSSRPLAGNPLENVDLCLHVGFSHQAPAISSAALPSSNLARSVHGSNSNSVGIPRKRGSGEFHRGESSNMGEGTGEVKRLATESQVRANNNVNPSPQSLSVVQQQPQFLRGHHVNPNNEGTPFLPPNTPDGTTNTDDERRGYHAPIPSQANGASSHSQLFPLQPSHSVRPLSFLSNSFMSSSAPSVNNLTVRNAPNSISSPCPHARVDNMIPFYEHRNDMIGPLVTSTYRPNGSYVDIDRDTTRRALLYGLRQFEPPEPLQLLPGIMGSGGRVSNAGANTYHPLRDYDSATAWFLPQGSRGTNHSAPPSSSGTQNHHRPIPQIPPLESLRELPSEIEHPGIFGMSQAFTGLSLETITQFMEREIFLVDGDDSEETKEKCPVCLEEFCRGEDIGKLHSCVHKFHFDCIKEWLMQKNLCPVCRRTALERPNDPSLTIYS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00457 519 ProSiteProfiles Zinc finger RING-type profile. 461 503 IPR001841 -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 122 136 - -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 377 407 - -
Vimu11g00457 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 507 IPR013083 -
Vimu11g00457 519 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 117 507 IPR045191 GO:0061630
Vimu11g00457 519 MobiDBLite consensus disorder prediction 122 158 - -
Vimu11g00457 519 SMART ring_2 461 502 IPR001841 -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 193 214 - -
Vimu11g00457 519 Pfam Ring finger domain 460 503 IPR001841 -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 230 245 - -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 1 26 - -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 7 23 - -
Vimu11g00457 519 SUPERFAMILY RING/U-box 460 510 - -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 193 245 - -
Vimu11g00457 519 MobiDBLite consensus disorder prediction 377 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00457 Vimu-Chr11 4907688 4910883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00457 431 510 C3H Transcription Factor Family AT2G15530 43.373 8.78e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00457 - K10635 vra:111241966 919.457