Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00456 GTTCGATCTATCTTGGATGCTCTGACCAATGGTGGCGGTCTAATCTTTGAGATAGAGAATCCTGAACCATCTACTGCACTAACTCTTCCAACGATCATGCAGCACATGGAGCGTGAGACTTTGGTGGATGTTGATGGAGATGGCCCAGTAGAGCATCCACAAAGATGCACCATCTGTTTGGAAGACTTTGAGAAGGGATCGGAAATCGGGAAGATGCAGTTATGTGATCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCCTGCAGAAGAACCTTTGCCCCGTGTGCAGAAGAGTTGCATTGCGAAGGCATCTGAACAGCCCAAATGTAGAATATGGTTATTTCTTTCTTTAA 357 0.451 VRSILDALTNGGGLIFEIENPEPSTALTLPTIMQHMERETLVDVDGDGPVEHPQRCTICLEDFEKGSEIGKMQLCDHKFHFDCIKQWLLQKNLCPVCRRVALRRHLNSPNVEYGYFFL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00456 118 Pfam Ring finger domain 55 98 IPR001841 -
Vimu11g00456 118 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 24 102 IPR045191 GO:0061630
Vimu11g00456 118 SUPERFAMILY RING/U-box 55 103 - -
Vimu11g00456 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 102 IPR013083 -
Vimu11g00456 118 SMART ring_2 56 97 IPR001841 -
Vimu11g00456 118 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00456 Vimu-Chr11 4897049 4900538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00456 5 100 C3H Transcription Factor Family AT2G17450 33.000 5.99e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00456 - K10635 vun:114179757 214.157