Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00445 ATGGAAAACGTTCGAGTCATCTCCACCACCACAATCAAAGCATCCGTTCCCAATAACGCTAACTCACCTCATACAGTCGATTTAACTCCCTGGGATCTCCAATTCCTCCCTACTGAAACCATCCAAAAAGGCCTTCTTTTTCGCAACGTAAAACACACACCATTCCAAATCCACCACCTCCAACACTCCCTTTCCTCCACTCTAGCATTCTTTCCACCCCTCGCAGGTCGTCTCGCCATACTCCGACATCATCACAGCATTGTCTCATCCCACATCCTATGCAACAACGCTGGAGCACTCTTTGTCCACGCCGTTGCACCCAACATCACTGTTGCACACATCCTTCAACCAAAATACGTTCCTCTCACTGTTTCCTCCTTCTTTCCAATAAACGGAGTTAAAAACTACGAGGGCACGTCGCAGCCATTGCTGGCAGTGCAAGTGACGGAGCTAGTTGACGGCATCTTCATCGCCCTAACAGTGAACCACGTCGTTGCTGACGGCAAGTCATTCTGGCATTTCGTGAATTCCTGGGCTGAAATCTCACGTGGCTCCCTTCAAATATCCAAACTTCCTTCTCTCCGCCGTTACTTCCCCGATGGCATTGACCACCCCATACACTTTCCCTTCACAGAGGAAGAAGAAAACCAACATTCCCCAAACCTCAAACCAGAAGCTCCACATGAGAGGGTATTCCATTTCACGAAGGAAAAAATTGCCGAACTCAAATCAAAAGCTAATGCAGAGGCCAACACAGACAAAATATCTTCTCTGCAAGCGCTTCTAACTCTCCTTTGGCGCGCTGTGACACGTTGCAAGCGGGTCGAGCCGCAAGAAAACGTGCATTATGTGTTGTTCATTGGCGTTTGGTCGAGGATGGTTCCAGCACTGGCAGAGGGTTATTTTGGAAACTCAGTTATAGCCAGTATTGTGACGATGAAATGTGGGGAACTATTGGAGGGTGGGATTGGAAAGGGGGCTTTAGAGATGAACAGGGTGATTTCTTTGCAGTCTGGTGAGAAGGTAAAGAAGCAGTATGAATCCTGGGTGAGAAGGCCAAGGCTTTTAACGTTGCCGAGTGGCGTGGGTGGTAGTAATTACTTGATCACTAGCAGTTCTCCAAGGTTTAAGATATTAGATAACGATTTTGGTTGGGGAAAGGCTGAAGCAGTTGGAATTGGAGGTGGGCAACATAAACGTAACGGCATGATTACTGTGTTCGGCGGAGCTGAAGAAGGGTCCATTGACATTGTAGCCACCCTTCCTTATTTGATTTTGGAGGCCATGGGAGATGACGCAGAGTTCATGGATTTTCAGACACAAAGCTTTCAAAACAATCTTAAAATTATGGAAGCCGTGGAAGTCATCAGCACCACCACAATCAAGGCACCCACTCATAGTATCCATAACTCACCTCCTAAAATCCATTTAACTCCATTTGATCTTCCATATCTCACAGTTGAATCCATCCAAAAAGGTCTTCTTTTTGGGAGCCCAAAAGACACAGCATTCCATTTAAATAATCTTCAACACTCACTTTCCTCCACCCTTGCCTTCTTTCCTCCTATCGCTGGTCGTCTCGTCATACTCCAACATCACGACAACATTGTCTCAACCCACATCCTTTGCAACAACGCTGGAGTCCTCTTTGTCCACGCCGTTGCACCCAACACCACTGTCGCTCACATCCTTCAACCCAAATACAACCCTCCCATCATTCGCTCCTTCTTTCCACTCAACGGCGTTAAAAACTACAAGGGCACGTCAGACCCATTGCTGGCAGTACAGGTGACGGAGCTAGTTGACGGCATCTTCATCGCCCTAACATTCAACCACGTCGTTGCCGACGGCAAGTCGATGTGGCATTTCGTGAATTCCTGGGCTGAAATCTCACGTGGCTCCCTTCAAATATCCAAACTCCCTTCTTTCGACCGTTACTTTCCCGATGGCATTGACCACCCCATGCGCTTTCCCTTCACAAAGGAGGAAGAAACCCAACACTCCCCAAACCTCAAACAACAAATTCCGCCTGAGAGGGTCTTCCATTTCGGGAAGGAAAAAATCGCGGAACTGAAAAGAAAAGCCAACGCAGAAGCCAACACAGACAAGATATCTTCTCTGCAAGCGCTTTTAACTCTACTTTGGCTCTGTGTGATTCGTTGCCGACACGTGGTGCTTGAAGAAGAGATAAGTTACGTGCTTGCGATCGGCGTTGGGCACAGGATGGTTCCACCACTGGCAGAGGGTTATTTTGGAAACTCAGTGATGTTTGGTGTTGTGACCATGAAAGCCGGGGAACTATTGGAGGGTGGTCTTGGGAAGGGTGCTCTGGAGATGAACCAGATGATTGCTTTACACTCTCATGAGAGGATAAAGAACCACTATGAGTCTTGGGTGAGAACTCCGAGGCTGCTTAAATTGTTTGGTGATTCACTGTCCACTAGCAGTTCTCCAAGGTTCGACTTTTACGGTAACGATTTTGGGTGGGGAAAGCCCGTGGCGGTAAGAAGTGGCGTCGCAAATAAGAGTTGCGGAAAGATTAGTGTGTTTGCAGGCGCTGAAGAAGGTTCTATCGACATTGAAGTGTGCCTTCCTTTTGAGATTTTGGAGGCACTGGAAAATGACCCTGACTTCATGGATGCCGTTTCCAGCTAG 2655 0.4772 MENVRVISTTTIKASVPNNANSPHTVDLTPWDLQFLPTETIQKGLLFRNVKHTPFQIHHLQHSLSSTLAFFPPLAGRLAILRHHHSIVSSHILCNNAGALFVHAVAPNITVAHILQPKYVPLTVSSFFPINGVKNYEGTSQPLLAVQVTELVDGIFIALTVNHVVADGKSFWHFVNSWAEISRGSLQISKLPSLRRYFPDGIDHPIHFPFTEEEENQHSPNLKPEAPHERVFHFTKEKIAELKSKANAEANTDKISSLQALLTLLWRAVTRCKRVEPQENVHYVLFIGVWSRMVPALAEGYFGNSVIASIVTMKCGELLEGGIGKGALEMNRVISLQSGEKVKKQYESWVRRPRLLTLPSGVGGSNYLITSSSPRFKILDNDFGWGKAEAVGIGGGQHKRNGMITVFGGAEEGSIDIVATLPYLILEAMGDDAEFMDFQTQSFQNNLKIMEAVEVISTTTIKAPTHSIHNSPPKIHLTPFDLPYLTVESIQKGLLFGSPKDTAFHLNNLQHSLSSTLAFFPPIAGRLVILQHHDNIVSTHILCNNAGVLFVHAVAPNTTVAHILQPKYNPPIIRSFFPLNGVKNYKGTSDPLLAVQVTELVDGIFIALTFNHVVADGKSMWHFVNSWAEISRGSLQISKLPSFDRYFPDGIDHPMRFPFTKEEETQHSPNLKQQIPPERVFHFGKEKIAELKRKANAEANTDKISSLQALLTLLWLCVIRCRHVVLEEEISYVLAIGVGHRMVPPLAEGYFGNSVMFGVVTMKAGELLEGGLGKGALEMNQMIALHSHERIKNHYESWVRTPRLLKLFGDSLSTSSSPRFDFYGNDFGWGKPVAVRSGVANKSCGKISVFAGAEEGSIDIEVCLPFEILEALENDPDFMDAVSS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00445 884 Pfam Transferase family 4 436 - -
Vimu11g00445 884 Pfam Transferase family 453 878 - -
Vimu11g00445 884 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 455 879 - -
Vimu11g00445 884 Gene3D - 659 874 IPR023213 -
Vimu11g00445 884 Gene3D - 209 429 IPR023213 -
Vimu11g00445 884 Gene3D - 450 655 IPR023213 -
Vimu11g00445 884 Gene3D - 2 205 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00445 Vimu-Chr11 4763859 4773322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00445 509 874 Monolignol Biosynthesis Gene Families AT5G48930 27.013 6.52e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00445 - - gmx:100797643 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00445 11 4763859 4773322 Vimu11g00445 11 4763859 4773322 ECH