Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00440 ATGCTTTCGTCTAAGCTTGCTCAAACTGGCCTCGTCTATGCTGTATTGGGCAGTTGGGGAATACAAAGATCTTTGAACATCTCCTTTACTACATTTTTGCAACACCTACCTCTTTCTCTCTCTCTCTTCACTCGTCCTAGAATGTGGGATCTCAATTACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCTACGGGGACGATGACAACATCAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCGGCTGTGGTAATCGAGGACGGATCAGAAGAAGAGGAGGAGGACGACGACGAGGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAGCGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCGAAGATTGTGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTGGAGGAGGCTGACGTGGCGGTTGCATCGGGTGGTGGAAGCTCCACCTTCCCTAGAGCTCACTGGGTAGGTGTGAAATTTGTCCAATCAGAAGCACTTGGTGCTGGAAAATCAGTTGAAGTCTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGAAGCTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGGGCCTATGATCGTGCGGCCATCAAGTTCCGAGGAGTGGAGGCCGACATAAACTTCAATATTGAAGATTATGAAGACGACCTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGACGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGGCTTATGACAAAGCAGCCATAAAATGCAATGGGAAAGAGGCCGTAACCAATTTTGATCCCAGCATATATGAGAACGAACTTAACTCCGGAGCAGAATCGACAGGTAACGGTGGAGATCACAATCTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGGGTGGCGGTAACCAAGCGTTGGGGAATCATCATCATCATCATCATCATCATCATCACGGGAGCAATGGTGGAAATCATGAACAACAGGTGGGAGGTGAATCAAATTGGCGAAATGGGGGAAGCAAAACGAAGCTGGTGAATATACTGCCAAAACCATGTAATAGAGGGAACAAGGACACACAGGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACACACCTTCATTGTCCAGCTTCCAGTGAAATGCAAAGATATGGTCCCTACAGCAGCAGCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA 1614 0.4796 MLSSKLAQTGLVYAVLGSWGIQRSLNISFTTFLQHLPLSLSLFTRPRMWDLNYSPDQRKDEESEGCSSLKTSIYGDDDNIKGKRVGSVSNSSSSAVVIEDGSEEEEEDDDEDEEGGRRSMKKRSSKIFGFSVTEDCESMDSDHPPVTRQFFPVEEADVAVASGGGSSTFPRAHWVGVKFVQSEALGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGKEAVTNFDPSIYENELNSGAESTGNGGDHNLDLSLGNSSSKGGGNQALGNHHHHHHHHHHGSNGGNHEQQVGGESNWRNGGSKTKLVNILPKPCNRGNKDTQGRDVHGESEALRMLSQTHLHCPASSEMQRYGPYSSSSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00440 537 MobiDBLite consensus disorder prediction 190 209 - -
Vimu11g00440 537 SUPERFAMILY DNA-binding domain 209 267 IPR016177 GO:0003677
Vimu11g00440 537 CDD AP2 210 267 IPR001471 GO:0003700|GO:0006355
Vimu11g00440 537 MobiDBLite consensus disorder prediction 53 72 - -
Vimu11g00440 537 MobiDBLite consensus disorder prediction 351 382 - -
Vimu11g00440 537 SUPERFAMILY DNA-binding domain 301 346 IPR016177 GO:0003677
Vimu11g00440 537 MobiDBLite consensus disorder prediction 351 441 - -
Vimu11g00440 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 140 438 - -
Vimu11g00440 537 MobiDBLite consensus disorder prediction 384 398 - -
Vimu11g00440 537 FunFam AP2-like ethylene-responsive transcription factor 209 268 - -
Vimu11g00440 537 ProSiteProfiles AP2/ERF domain profile. 210 266 IPR001471 GO:0003700|GO:0006355
Vimu11g00440 537 MobiDBLite consensus disorder prediction 80 124 - -
Vimu11g00440 537 Pfam AP2 domain 210 258 IPR001471 GO:0003700|GO:0006355
Vimu11g00440 537 MobiDBLite consensus disorder prediction 99 113 - -
Vimu11g00440 537 Gene3D AP2/ERF domain 301 345 IPR036955 GO:0003700|GO:0006355
Vimu11g00440 537 Gene3D AP2/ERF domain 209 268 IPR036955 GO:0003700|GO:0006355
Vimu11g00440 537 MobiDBLite consensus disorder prediction 401 419 - -
Vimu11g00440 537 CDD AP2 301 346 IPR001471 GO:0003700|GO:0006355
Vimu11g00440 537 SMART rav1_2 302 350 IPR001471 GO:0003700|GO:0006355
Vimu11g00440 537 SMART rav1_2 210 272 IPR001471 GO:0003700|GO:0006355
Vimu11g00440 537 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00440 Vimu-Chr11 4702569 4705806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00440 48 376 AP2-EREBP Transcription Factor Family AT4G36920 64.624 1.33e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g00440 AP2 8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00440 K09284 - gmx:100792442 723.776