Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00434 ATGCAAAGGGCAACGGCAGCATTTCTCCCTCTGTTGTTGCTACATATAATCACCTTCACCACCACTTGCGGTGCCTCCACGGTGTCCTCCGACGCGGTGTGGTTGCTGTCGTTTAAACGGGAAGCGGACCAAGACAACAGGCTCCTCTACACTCTGAACGAGCCGTACGACTACTGCGAGTGGGAGGGCGTGAAGTGTGCACAAGGGAGAGTGGTCCGCTTCGTGGTCCAGTCCATGGGCCTGCGCGGCCCATTCCCTCCGGACACCCTGACGAAACTGGACCAGCTCCGCGTCATGAGCCTCCGCAACAACTCCCTCTACGGGCCCATCCCTGATCTCTCCTCTCTCACCAACCTCAAGTCCCTCTTCCTCGACTACAACAACTTCTCCGGTTCCTTCCCTCCTTCTCTCCTCCTCCTCCACCGCATCCTCACTCTATCCCTTTCTCACAACAATCTCTCCGGTTCGATCCCGGTTCGGCTCACTCTCCTCGACCGTCTCATCGCCCTCCGCCTCGACTCCAACAACTTCTCCGGCACGCTCCCTCCTCTCAACCAAACCGCTCTCAAACTGCTCAATGTCTCCAATAACAACCTGACCGGTCCTGTTCCCGTTACTCCGACCCTCTCTAAACTCAACGCCGCCTCCTTTTCGGGAAACCCTGGCCTCTGCGGGGAGATTGTTCACCGAGAGTGTGGCTCGCGCTCCCGCTTTTTCGGCCCCGCCACGTCCACCTCCACGGCGCCGTTGAGTCAGAGCGAACAGTCTCAGGGTATTTTGGTTGTGCCTGCTTCCGCCCAAACAAAGCGTCATCGAAAGACTGGGCTGGTGGTTGTGGGCTTTGTTGTGGCTGTTGTTCTTGTGAGTGTTTTTGTTGTGTCTGTGGTTTCGCTTGTGAGAAGGAGGCAGGCGGCGGCTGGGAAAGCGGTGGTTGCGGAGGGGGGTGAGGTGGAGGCGGTTGTGGAGGAGGAGGAGAGGGAGGTGAAGGTGAGGAGGATGGAGGAGGCGCACAGGAGTGGGAAACTGGTGTTCTGCTGCGGGGAGGCGCAGCAGTATACGCTGGAGATGCTGATGCGGGCTTCGGCGGAGTTGCTGGGGAGGGGGAGCGTGGGGACGACGTACAAGGCGGTGCTGGATGCGCGGTTGATAGTGACGGTGAAGAGGTTGGATGGGGGAAAGAGTGGGGAGAGTGATGGAGTAGTCTTTGAGCGCCACATGGAGGCTGTGGGGAGGCTTCGCCACCCCAATTTGGTTCCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATATGATTATCAGCCCAATGGCAGCATCTTCAACCTTGTTCACGGTAGTCACTTTCCATTTGTTAACATCAATTATGAATTCAACTGCACTGTTTAG 1395 0.572 MQRATAAFLPLLLLHIITFTTTCGASTVSSDAVWLLSFKREADQDNRLLYTLNEPYDYCEWEGVKCAQGRVVRFVVQSMGLRGPFPPDTLTKLDQLRVMSLRNNSLYGPIPDLSSLTNLKSLFLDYNNFSGSFPPSLLLLHRILTLSLSHNNLSGSIPVRLTLLDRLIALRLDSNNFSGTLPPLNQTALKLLNVSNNNLTGPVPVTPTLSKLNAASFSGNPGLCGEIVHRECGSRSRFFGPATSTSTAPLSQSEQSQGILVVPASAQTKRHRKTGLVVVGFVVAVVLVSVFVVSVVSLVRRRQAAAGKAVVAEGGEVEAVVEEEEREVKVRRMEEAHRSGKLVFCCGEAQQYTLEMLMRASAELLGRGSVGTTYKAVLDARLIVTVKRLDGGKSGESDGVVFERHMEAVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSIFNLVHGSHFPFVNINYEFNCTV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00434 464 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 449 IPR046959 -
Vimu11g00434 464 SUPERFAMILY Protein kinase-like (PK-like) 363 453 IPR011009 -
Vimu11g00434 464 Gene3D Phosphorylase Kinase; domain 1 320 436 - -
Vimu11g00434 464 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Vimu11g00434 464 Gene3D Ribonuclease Inhibitor 187 234 IPR032675 -
Vimu11g00434 464 ProSiteProfiles Protein kinase domain profile. 359 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00434 464 FunFam Probable inactive receptor kinase At5g67200 30 140 - -
Vimu11g00434 464 FunFam Leucine-rich repeat receptor-like protein kinase 142 234 - -
Vimu11g00434 464 Pfam Protein kinase domain 362 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00434 464 SUPERFAMILY L domain-like 27 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00434 Vimu-Chr11 4590759 4592153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00434 26 449 Receptor kinase-like Gene Family AT3G50230 49.446 9.18e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu11g00434 Pkinase 4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00434 - - gmx:100786526 588.571