Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00428 ATGGCCGTGGAGCTCATGACAGGCTACAGAACCACCGCTTTCACCACCAAAGCAGAGGAAAATGCCGTCCAGGAAGCAGCCTCCGGTTTGGAGAGCGTCGAGAAGCTCATCAGAATCCTCTCTCAGACTCCCCAACAATACAACTCCTCCAATCAAATAGCTATCGACTGCAAGGCCGTTGCCGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCACTCCTAGGCCCAGGTCCAGGCCCAGCCCCAACCCCAACCCCAACCCCAACCCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTTCCTCCTCCTCCGCCTCCTCCTTCCACACAACCCTCCCAGTCTCCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACGGCACCCTCAACGACTCCTCTTCCAAAACCATTTATTTCTCCTACCCCTCCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACAAAACAACCCTCTTCCTCCTCGCCGCCCCCGCCTGCGCCGGGTTCTTTCCACATCACCACTCTCTCCCACGTCTCATCCGCGGGAAAGCCTCCCCTCTCTTCCTCCTCTTCTTTCAAGAGGAAGTGCAGCTCCGAGAACTTGCCTTCTGGAAAGTGCGGTAGCTCCTCTAGCCGCTGTCATTGCTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAAGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCCGATATTCCACCGGATGATTATTCTTGGAGGAAGTATGGGCAGAAACCGATCAAAGGATCCCCTCATCCAAGGGGTTACTACAAGTGCAGTAGCGTGAGAGGGTGTCCGGCGCGAAAGCATGTGGAGCGAGCTTTGGATGATCCGGCTATGCTGGTGGTAACCTACGAGGGGGAGCACAGTCACACTCTGTCCGCGGCTGATGCCACTAACCTTATTCTTGAATCATCTTGA 972 0.5586 MAVELMTGYRTTAFTTKAEENAVQEAASGLESVEKLIRILSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPGPGPAPTPTPTPTPTGHARFRRAPLPPPPPPPSTQPSQSPVFHATPLHQIPKTDGTLNDSSSKTIYFSYPSPATSFISSLTADAHTKQPSSSSPPPPAPGSFHITTLSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKSRKMRLKKVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHSHTLSAADATNLILESS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00428 323 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g00428 323 MobiDBLite consensus disorder prediction 159 203 - -
Vimu11g00428 323 MobiDBLite consensus disorder prediction 181 203 - -
Vimu11g00428 323 Pfam Plant zinc cluster domain 202 248 IPR018872 -
Vimu11g00428 323 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g00428 323 MobiDBLite consensus disorder prediction 76 119 - -
Vimu11g00428 323 Pfam WRKY DNA -binding domain 252 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g00428 323 MobiDBLite consensus disorder prediction 98 114 - -
Vimu11g00428 323 Gene3D WRKY domain 235 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g00428 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 315 IPR044810 GO:0003700
Vimu11g00428 323 FunFam WRKY transcription factor 65 234 311 - -
Vimu11g00428 323 SUPERFAMILY WRKY DNA-binding domain 247 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00428 Vimu-Chr11 4551686 4552971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00428 19 308 WRKY Transcription Factor Family AT2G24570 45.000 2.90e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g00428 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00428 - - vum:124838807 459.144