Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00421 GTGCTTGCTGATATTGTAAAATTGGCACAAAAGAGAGGCCTCAGGGGTAAGCTAGGAGACTGGAAAGAATTCTTGGACAGTCATGATAAACAGTTTGGGACCCGTTTGAGTGATCCATCAAAGCGACCCCATGAGTTATTGGCTACATTTCTAAAGTCTTTTTCGAAGGAGGAAGATTTGAAGTTTTTTGACAACATCATGCGACATCATGAAAATCAATACATGTTGGAGCGACTGAAAGATAAATCCCTTGAGTCCCCGGAGCAGAGGCTAGTTCAAATAACTCTGCAGCATCCGTTATATCCATTGGATTATTCATCTCCATCAATTGATGAGGGTTGGATAGTTATAAATGTTAAAAACAAGCCCAAGGTGATGAAGTCCACTACAATGCTCGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGACGAGGTAGTTAAAGTTTGTGTGGTAGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCCTTGGCTGATGTACAGAAATCCATGAAGAAGTTGTTATCAAAAGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATTGACACTTCCTATATCTTCCAATCCACGGATGGGCCTATGCACAGAAAACCTTCTTTGAATGGTTTATGTCAGGCTGTTTTGGGTCGTGCTGTTCGGGAAAAAGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCTATGAACCTCGTTCTTGCAAAGATCAAACATGGTGTTGATAGGGAATTTCCAATTTCACTGGCTCAAGAGCGTGTTCCAGAAAGTGATACCACAAAGCTTTTTCTTCACAAAATACCAAACAATGTAAACACTGAAGCACTGCATACCATTGTTCCTGGAGAATTCAGAACAGAACTGCAGTCTACTAGGAAAGTTCAAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGATGACGCCTATGAAAAAGTCCAAGGAATCCAATTAAAGGATAATCAAGGGCGTCCACAAAAACTTGTAACATTTCTGACAAGTAAAGGCATCCCTGTCACTCTATATGTTCGGAAAATGTTAAGTGATGAACCCACTGTCCAGAATGGCTCTAATAAGAGGGCTTTACAAACGGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATAGATAAAAACACTGAAGAGGATACCCCAAGCTGTGATGCCCATTTAAACGAGATTGAAGCGCTGAATCAACGATTAAAGCAAAGTGAATTGGAGATCGAATCGTTGAAGAAAGAGCTGACACAAAAAGATTTTGAAATAGCCGCCCTGCATAAAATGGCGTCCTCTTATAAGAGAAGATGGTCCAAAGAAAATAACCGCCCTGAAAGTGTAGCCAGGAGATGA 1512 0.4074 VLADIVKLAQKRGLRGKLGDWKEFLDSHDKQFGTRLSDPSKRPHELLATFLKSFSKEEDLKFFDNIMRHHENQYMLERLKDKSLESPEQRLVQITLQHPLYPLDYSSPSIDEGWIVINVKNKPKVMKSTTMLAVDCEMVLCEDGTDEVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADVQKSMKKLLSKGAILVGHSLHNDLRVLKLDHVRVIDTSYIFQSTDGPMHRKPSLNGLCQAVLGRAVREKGAPHNCLDDACAAMNLVLAKIKHGVDREFPISLAQERVPESDTTKLFLHKIPNNVNTEALHTIVPGEFRTELQSTRKVQGRHYSALAVFKNTQEADDAYEKVQGIQLKDNQGRPQKLVTFLTSKGIPVTLYVRKMLSDEPTVQNGSNKRALQTDEAVDVSKKAKIDKNTEEDTPSCDAHLNEIEALNQRLKQSELEIESLKKELTQKDFEIAALHKMASSYKRRWSKENNRPESVARR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00421 503 SMART exoiiiendus 130 291 IPR013520 -
Vimu11g00421 503 Pfam Exonuclease 133 281 IPR013520 -
Vimu11g00421 503 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 4 304 IPR047021 GO:0004527
Vimu11g00421 503 SUPERFAMILY Ribonuclease H-like 131 286 IPR012337 -
Vimu11g00421 503 Coils Coil 441 475 - -
Vimu11g00421 503 Gene3D - 126 298 IPR036397 GO:0003676
Vimu11g00421 503 FunFam Small RNA degrading nuclease 3 126 300 - -
Vimu11g00421 503 CDD REX1_like 132 283 IPR034922 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00421 132 227 C2H2 Transcription Factor Family AT2G48100 37.143 8.73e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00421 K14570 - gmx:100785565 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00421 11 4501741 4505935 Vimu11g00421 11 4501741 4505935 ECH