Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00418 ATGACTCTCTTCTGTCAACCTCTCATAATTTCACTGCTTCTTCTCCTCGCTGTTCACCACTCTTCTGCCCTCAGTAGAGACGGCGTTCTGTTGCTTTCTTTCAAGTACGCTGTGCTCCACGACCCTCTTTACGTCCTCGCAAACTGGAACTACACTGACCAGACACCGTGTTCCTGGAACGGCGTTTCTTGTTCCACCCTTCCAGCGACCAACGGTACCGAGTACCGCGTCACCTCCTTGTCGCTTCCCAATTCTCAGCTTTTCGGTTCAATTCCCTCCGATCTGGGTTCCATCGAACACCTTCAAGTCCTAGACCTTTCCAACAACTCCCTCAACGGCTCTCTTCCTTCTTCTCTGTCCCAAGCCTCCCAGCTTAGGTTCCTCAACCTCTCTAACAATTTAATAACAGGGGAGCTTCCCCAGTCCATACCCCAGCTTCAGAATCTCCAATGCCTAAACCTCTCCGACAATGCTTTGGCGGGAAAACTGCCTCACGATTTGTCCAACATGCACAACCTAACTCTGGCTTCCTTCAAGAACAATTACTTGTCAGGTTTTCTTCCCACCGGGTTGAGAACGTTGCAGGTTTTGGATCTGTCTTCAAACCTGTTCAACGGGACTCTTCCCGCGGATTTCGGCGGAGACGCCATGCGTTACATAAACATCTCCTACAACAGATTTTTCGGCGAAATCCCGACGGAGTTCGCAGCAAACATTCCCGGGAACGCCACCGTCGACCTTTCGTTCAACAACCTTACCGGCCAAGTTCCCGACTCCGCTGTGTTTTTGAATCAGAACTGGAAATCTTTCTCCGGTAACGTCAACCTGTGTGGAGAACAAACGAAGAATGTGTGCCCTGTTCCTTCTTCGTCGTCCTCTAAACCGAAAGATTCAGCTCCTATATCTCCTCCTGCAATCGCGGCAATCCCGCGGACGTTTGATTCTTCGGCGGCGCCTAGGGGGAAAAAAGGGAGTGGTCTGAAACGAGGAACGATTATAGGAATCGTGGTGGGAGACGTAATTGGGATAGCGATCCTTGGCATGATATTTGCGCAGGTGTACCGGTTGAAGAAAAAGAAGGAGGTGGTGAAGAAGGAGACGGTTGTGAGGAGTGGAAGTGGTAGTGAGAGTGAGAGTTCGCTGGAGTCTAGAAGGTTTATGAGGTGGTCGTGTTTGAGTAAGAGAGCGGAAGATGAAGAGTGTTCGGAGACAAGAAGCAGTTGTGATAGCGAGGTGGAGGAGCAGAAGCCTAAGGGTCCTCAACAGGAGGAGAAAACGGGGACTCTTGTGATTGTGGACGGAGAACGACAGCTTGAACTGGAAACGCTCCTGAAGGCTTCTGTGTACATATTGGGTGCGACGGGGTCCAGCATAATGTACAAGGCTGTCTTGGAAGATGGTATGTCCTTGGCGGTTCGGAGAATCGGGGAGAGCGGTGTGGAGCGGTTCAAGGACTTCCAGAACCAGGTTCGACTTATTGCTAAACTGGTGCACCCTAATCTGGTTCGCATTCGAGGCTTCTACTGGGGACACGATGAGAAACTCATCCTCTATGATTTCGTTCCAAACGGTTGCCTTGCCAATGTTCGTTACAGGAAGGCGGGCACCTCGCCGACTCATTTACCGTGGGAAATCAGGCTGAAGATAGCGAAAGGGGTGGCACGTGGACTGACTTATCTCCACGAGAAGAAACACGTGCATGGAAACTTGAAGCCTAGCAATATTCTGCTGTGCAATGACATGGAGCCCAAGATTGGAGACTTTGGGCTTGAGAGGATAGTCACCGGTGACACCAGTTATAAGGCTGGCGGATCGGCGCGTATTTTTGGGAGCAAGAGATCCACGGCCTCCCGGGACAGTTTTCAGGACATTACCTATGGGCCAAGCCCGAGCCCAAGCCCGAGCCCTAGTTCCATGATGGGCTTATCTCCTTACCATGCTCCCGAGTCGCTGAGAAACCTGAAGCCTCACCCCAAGTGGGACGTGTACTCTTTTGGGGTCATGTTTCTTGAGCTTCTAACGGGGAAGATTGTGGTTTTGGATGATATGGGCCAAGGGCCTGGGGTTTTGACGGAGGATAAGAACCGGGTCTTGCGTATGGTTGATATGGCTATCAGGGCCGACATGGAGGGGAGAGAGGAGGCCCTGCTGGCCTACTTCAAGCTAGGGTATAGTTGTGTGTCTAGCGTTCCACTGAAAAGGCCTTCAATGAAAGAGGTGCTACAAGTTCTTGAAAAGATCTCATCCTCCTCTTCTTCCTCCTCATATTACTATAGCGTCTAA 2283 0.5103 MTLFCQPLIISLLLLLAVHHSSALSRDGVLLLSFKYAVLHDPLYVLANWNYTDQTPCSWNGVSCSTLPATNGTEYRVTSLSLPNSQLFGSIPSDLGSIEHLQVLDLSNNSLNGSLPSSLSQASQLRFLNLSNNLITGELPQSIPQLQNLQCLNLSDNALAGKLPHDLSNMHNLTLASFKNNYLSGFLPTGLRTLQVLDLSSNLFNGTLPADFGGDAMRYINISYNRFFGEIPTEFAANIPGNATVDLSFNNLTGQVPDSAVFLNQNWKSFSGNVNLCGEQTKNVCPVPSSSSSKPKDSAPISPPAIAAIPRTFDSSAAPRGKKGSGLKRGTIIGIVVGDVIGIAILGMIFAQVYRLKKKKEVVKKETVVRSGSGSESESSLESRRFMRWSCLSKRAEDEECSETRSSCDSEVEEQKPKGPQQEEKTGTLVIVDGERQLELETLLKASVYILGATGSSIMYKAVLEDGMSLAVRRIGESGVERFKDFQNQVRLIAKLVHPNLVRIRGFYWGHDEKLILYDFVPNGCLANVRYRKAGTSPTHLPWEIRLKIAKGVARGLTYLHEKKHVHGNLKPSNILLCNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTASRDSFQDITYGPSPSPSPSPSSMMGLSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGQGPGVLTEDKNRVLRMVDMAIRADMEGREEALLAYFKLGYSCVSSVPLKRPSMKEVLQVLEKISSSSSSSSYYYSV 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00418 760 MobiDBLite consensus disorder prediction 611 644 - -
Vimu11g00418 760 SMART LRR_typ_2 191 214 IPR003591 -
Vimu11g00418 760 SMART LRR_typ_2 146 170 IPR003591 -
Vimu11g00418 760 SMART LRR_typ_2 98 122 IPR003591 -
Vimu11g00418 760 FunFam Leucine-rich repeat receptor-like protein kinase 193 287 - -
Vimu11g00418 760 SUPERFAMILY L domain-like 29 278 - -
Vimu11g00418 760 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vimu11g00418 760 CDD STKc_IRAK 451 747 - -
Vimu11g00418 760 MobiDBLite consensus disorder prediction 400 427 - -
Vimu11g00418 760 FunFam Os07g0541700 protein 522 611 - -
Vimu11g00418 760 MobiDBLite consensus disorder prediction 400 421 - -
Vimu11g00418 760 Gene3D Transferase(Phosphotransferase) domain 1 521 757 - -
Vimu11g00418 760 Pfam Protein kinase domain 451 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00418 760 PRINTS Leucine-rich repeat signature 146 159 - -
Vimu11g00418 760 PRINTS Leucine-rich repeat signature 101 114 - -
Vimu11g00418 760 Gene3D Phosphorylase Kinase; domain 1 414 520 - -
Vimu11g00418 760 MobiDBLite consensus disorder prediction 611 628 - -
Vimu11g00418 760 ProSiteProfiles Protein kinase domain profile. 445 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00418 760 SUPERFAMILY Protein kinase-like (PK-like) 450 748 IPR011009 -
Vimu11g00418 760 Gene3D Ribonuclease Inhibitor 191 287 IPR032675 -
Vimu11g00418 760 Gene3D Ribonuclease Inhibitor 25 190 IPR032675 -
Vimu11g00418 760 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 192 - -
Vimu11g00418 760 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 168 752 IPR046959 -
Vimu11g00418 760 Pfam Leucine Rich Repeat 124 144 IPR001611 GO:0005515
Vimu11g00418 760 Pfam Leucine Rich Repeat 100 120 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00418 Vimu-Chr11 4451602 4454051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00418 10 758 Receptor kinase-like Gene Family AT4G37250 56.921 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu11g00418 Pkinase 1.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00418 - - pvu:PHAVU_003G240400g 1226.46