Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00414 ATGAGAGGAAGTGACCGACAGGTGTATGTGGAGGAACACGATAGAGGCAGGGAACAATCTAAGAAAGGACGCGTGTCCAATTACAGCTGTATCCCAACTCCAGAGGCAACCGCTTCCCAGGAAAAACCGGTACCAGGAACAATACAACCGACGCTGAAACCCGTAAAAGTGGAACCCCCTAAACCGAGAAACCCTTCTTCATTATTCCCTTCATCAATCAAGCAACAGCATAGTAATATCATGATGACCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCGTGGAGCCCCGAAGAGGACGAGGCCTTGCAGAAGCTCGTGGAGAGGCATGGGCCCAGAAACTGGTCGCTCATCAGCAGGTCAATCCCGGGCCGCTCTGGGAAATCCTGCAGGCTCCGATGGTGCAACCAGCTCTCGCCCCAGGTCGAACACCGGGCTTTCACGCCCGAGGAAGACGACACGATAATCCGCGCTCATGCCCGCTTCGGTAACAAGTGGGCCACCATAGCCCGCCTTCTCTCGGGCCGCACCGATAACGCTATAAAAAACCACTGGAACTCAACCCTAAAGCGCAAGTGCGCCTCCATCATGATCGCCGAAGATCCCGCCGCCGCCGCTGCCGGTTTCAGTCCGCAGCCTCTCAAGCGCTCCGTCAGCGCCGGCGCTGCCCTGCCTCCAGGAAGCCCATCGGGATCCGATGTGAGCGAGACCAGCGCCCCTGGTGTAGTCTCCCCATCTCACGTGTTCCGGCCCGTGCCGGTTCGACTGGTGGTCGAAACGGCGTCGTCGTGCGACGACGGTCCCACCACCTCGCTGTCGCTGTGTCTTCCGGGCGTGGAGTCATCGGAAGCCTCGAATCGGGCGGCCGCGATGCAAGCTAATCCCTTCACTATAGCACCGGTGACGACCGTAGCGAGTCCGGCAGCGGAGGTTGGAATGGGAGCGTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCAGGAGATGATAAAGAAGGAGGTTCGGAGTTACATGGAGCAGCAGAGTGCGATGTGTTTTCAGGGTGTGGACGGTTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCGTAA 1107 0.5763 MRGSDRQVYVEEHDRGREQSKKGRVSNYSCIPTPEATASQEKPVPGTIQPTLKPVKVEPPKPRNPSSLFPSSIKQQHSNIMMTVSRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMIAEDPAAAAAGFSPQPLKRSVSAGAALPPGSPSGSDVSETSAPGVVSPSHVFRPVPVRLVVETASSCDDGPTTSLSLCLPGVESSEASNRAAAMQANPFTIAPVTTVASPAAEVGMGALNLSAEFMAVMQEMIKKEVRSYMEQQSAMCFQGVDGFRNVSVKRIGISRVDS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00414 368 PANTHER MYB PROTEIN-RELATED 81 274 - -
Vimu11g00414 368 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Vimu11g00414 368 MobiDBLite consensus disorder prediction 1 22 - -
Vimu11g00414 368 FunFam Transcription factor MYB44 147 193 - -
Vimu11g00414 368 MobiDBLite consensus disorder prediction 217 243 - -
Vimu11g00414 368 MobiDBLite consensus disorder prediction 1 76 - -
Vimu11g00414 368 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Vimu11g00414 368 SUPERFAMILY Homeodomain-like 90 186 IPR009057 -
Vimu11g00414 368 CDD SANT 147 190 IPR001005 -
Vimu11g00414 368 FunFam MYB transcription factor 93 144 - -
Vimu11g00414 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
Vimu11g00414 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 194 IPR017930 -
Vimu11g00414 368 Gene3D - 146 204 - -
Vimu11g00414 368 Gene3D - 92 144 - -
Vimu11g00414 368 SMART sant 144 192 IPR001005 -
Vimu11g00414 368 SMART sant 92 141 IPR001005 -
Vimu11g00414 368 MobiDBLite consensus disorder prediction 23 46 - -
Vimu11g00414 368 CDD SANT 95 137 IPR001005 -
Vimu11g00414 368 Pfam Myb-like DNA-binding domain 96 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00414 Vimu-Chr11 4405134 4407252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00414 81 367 MYB Transcription Factor Family AT4G37260 50.610 5.56e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g00414 Myb_DNA-bind_6 5.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00414 K09422 - gmx:100806145 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00414 11 4405134 4407252 Vimu11g00414 11 4405134 4407252 ECH
Vimu10g03267 10 42943525 42945124 Vimu11g00414 11 4405134 4407252 ECH
Vimu11g00414 11 4405134 4407252 Vimu11g01079 11 11473499 11475603 PCT
Vimu11g00414 11 4405134 4407252 Vimu11g00414 11 4405134 4407252 PCT