Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00411 ATGAACATGGAGAAGCATGCGATGTCCGGTGGTGGAGATTGTAAGAGTGGCGAAAAGTTATACAAAGGTGTGAGGAAAAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTCCCCAATAGTCGAGAATGCATATGGTTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTTGATGCTGCCATTTTCTATCTACGTGGTCGTCGTTCCAATTTCAACTTCCCCAACACTCTTTGCAACATGGACACCAATGTGCCTCTGCCTGTGCCTGCTCTCCAATCTCTTGCTTCACACGAGGTTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTACTACTAAAACCTCTTGCACAAGAATCTCAACTGATGTTGATGCTGCTGCTGCTGTTGGGAATTCTTCATCATTTCGAGGGAATTTGTGTAAATCTGACGACACAGTAG 453 0.4525 MNMEKHAMSGGGDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRECIWLGSYDSPEKAARAFDAAIFYLRGRRSNFNFPNTLCNMDTNVPLPVPALQSLASHEVQEVAAKFANEDPLLLKPLAQESQLMLMLLLLLGILHHFEGICVNLTTQ 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00411 150 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vimu11g00411 150 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vimu11g00411 150 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vimu11g00411 150 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Vimu11g00411 150 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vimu11g00411 150 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Vimu11g00411 150 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Vimu11g00411 150 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vimu11g00411 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 111 - -
Vimu11g00411 150 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00411 Vimu-Chr11 4369683 4370135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00411 21 111 AP2-EREBP Transcription Factor Family AT1G74930 67.033 1.39e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu11g00411 AP2 5.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00411 - - vra:106760431 242.662