Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00405 ATGGAGATTCCTAAGCTCCACATAATTCAACACTCTCGCTGTATAGCACTTCTTTTCCTTCTTCAGCTCTCATCACTGCAGTTCGCCTCACTGGGCTACAACGTCCCAGATAAGTACTTCATAAATTGTGGGTCAGACAACAGTGTTACCGAAAGTGGAAAGGTCTACGTTGGTGAATCAACACTTCAAGCCACTTTTAACAGCAGTAACACAGAAAGGAACCAGTCATCGGTTCCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGAAGGGACTCTTGGTATAAGTTCGACATCGATAAAAATGGCACCTACCTGGTACGCCTCCATTTCTTCCCTTTCTCTTCTCCCACTAATCTTTCCTCTGCCAGGTTCAGCGTTTCAGTTCCTGGCTTTTGGTTGTTGCAAAATTCTAATGGTAGAAATGATACCAATAATAACTCTGCTTTAGTAAAAGAGTTTTTCATGGAAATCAGTACCCCTAGCATAAAAATAACTTTCAGACCTCTGGAATCATCTTTTGCGTTTGTTAATGCCATAGAACTGTTTGTACTACCCCTCCATCTGATATCCGACAACGTTGCGCACTTCGCTCCGATTGGGGGTACATCTCCCCTCAGCGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGGCTTAACGTTGGTGGCCAATCTACCAGAGATATCTTATTAAGAAACTGGATTCCAGATGATATATATCTCACCTATCCGGAAAACGCCAAGAATCGTTCCGCTTACCAGGGTCAAATCGTGCCCCGTGTAGGTGATGACGCCGATGGTCCAAACGCAACTAGTTATACTGCGCCATCTGAGGTGTACGGAACTGCTAAGGAGTCTAAGAACAGCTCTGACAATGCCACAGACTTGGGACTTTTCAACCTGACATGGGCTCTTCCGGTGGACAACAAAACAGATAATTTCCTTCGGCTTCACTTCTGTGACTATGTCAGTCCACAAGTTAGCCTTACATACTTCGAACTTTCCATTTATGACGCCCATGTCATGGAGGTTAATAGTGACGTAAACGTGTCTAAGGAGTTGCCTGCCCCTTATTATTATGATTTCGTGGTGAGCTCTGACAACTCTGGATTTATTAAGGTCAGCCTAACACCTAATAGAACCGCTCCCGTACCAAATGCCTTTTTAAACGGGCTGGAAATAATGAAAGTGATTGAATCATCAAATACTGTCCCCGCTGACTTGGACGAACACGATTCCGAGCATAATCGTCTTCCTGTGTTGCTGGGTTCAGTTCTCGGTGGTTTAGTCTTGGTTGTTGTTGTGGTGCTACTTGGCTTTCTTTGGCGTTCTAAAATGAGGAAGGAAAAGCCCGTTGAGAATTCGGACTGGTTGCCAATCCCCGTTAATGCTGGAGGAAGTTCTCACAGCAGATTGACTGATATAACCAGTCACGGTTCTCCCCTTCCCAACATAAACCTTGGGCTCAAAATTAACTTGATTGATCTTCAACTGGCAACTAAGAACTTCCACGCAAGTCAGCTAATTGGCAAGGGTGGTTTTGGCAACGTCTACAAGGGAGTTCTCAAGAATGGCATGACAGTGGCTGTGAAAAGAAGCCAGCCAGGGTCGGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAATACAAAGTTGCCAAGTCTATCCTGGAAGGTGAGGCTTCAAATATGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCATCTGGGGGAATCATTCACCGTGATGTAAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGGTCAGGTCCTGCTGATACTCAGCCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTCAGGTCGCAACAGCTGACTGAAAAATCTGATGTCTATTCATTTGGAGTAGTTCTTTTGGAAGTGTTGTGTGCAAGAGCAGTGATTGACCCATCTCTTCCAAGAGATCAGATAAACTTGGCAGAATGGGGATTGCTTTGCAAAAACAAGGGGATACTCCAAGAGATCATCGATCCTTCCATCAAGGACCAAATTGATCAAAACTCACTCAGAAAATTTAGTGAGACCATAGAAAAATGCTTGCAAGAAGATGGTTCTGATAGGCCATCCATGGGCGATGTGTTGTGGGACTTGGAGTACGCGCTGCAGCTTCAGAAAGGTGCAAATGCAATACAGAGAGAGCCGTATGAGGATAGTTCTAGTAGTGTTTCTGCATCACTTCAATTGCCCAATGTTCGGCGTCTTCCTTCACTCTCCACACTGAGTGAAGCGGATGATACCATTGTGAGGGGTGATGAATCCGATAGTGTTGTGGATTCCGTTTTCTCCCAGTTGAAGATTGATGATGCCAGATAG 2547 0.4448 MEIPKLHIIQHSRCIALLFLLQLSSLQFASLGYNVPDKYFINCGSDNSVTESGKVYVGESTLQATFNSSNTERNQSSVPSPLYQTARIFRRDSWYKFDIDKNGTYLVRLHFFPFSSPTNLSSARFSVSVPGFWLLQNSNGRNDTNNNSALVKEFFMEISTPSIKITFRPLESSFAFVNAIELFVLPLHLISDNVAHFAPIGGTSPLSGGLYSRVLETKHRLNVGGQSTRDILLRNWIPDDIYLTYPENAKNRSAYQGQIVPRVGDDADGPNATSYTAPSEVYGTAKESKNSSDNATDLGLFNLTWALPVDNKTDNFLRLHFCDYVSPQVSLTYFELSIYDAHVMEVNSDVNVSKELPAPYYYDFVVSSDNSGFIKVSLTPNRTAPVPNAFLNGLEIMKVIESSNTVPADLDEHDSEHNRLPVLLGSVLGGLVLVVVVVLLGFLWRSKMRKEKPVENSDWLPIPVNAGGSSHSRLTDITSHGSPLPNINLGLKINLIDLQLATKNFHASQLIGKGGFGNVYKGVLKNGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIRHKHLVSLIGYCDERFEMILVYEYMEKGTLRDHLYNTKLPSLSWKVRLQICIDSARGLHYLHKGASGGIIHRDVKSTNILLDENHVAKVADFGLSRSGPADTQPHVTTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARAVIDPSLPRDQINLAEWGLLCKNKGILQEIIDPSIKDQIDQNSLRKFSETIEKCLQEDGSDRPSMGDVLWDLEYALQLQKGANAIQREPYEDSSSSVSASLQLPNVRRLPSLSTLSEADDTIVRGDESDSVVDSVFSQLKIDDAR 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00405 848 SUPERFAMILY Protein kinase-like (PK-like) 483 776 IPR011009 -
Vimu11g00405 848 CDD STKc_IRAK 511 776 - -
Vimu11g00405 848 Gene3D - 215 400 - -
Vimu11g00405 848 Gene3D - 38 184 - -
Vimu11g00405 848 SMART serkin_6 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00405 848 Gene3D Phosphorylase Kinase; domain 1 473 580 - -
Vimu11g00405 848 FunFam receptor-like protein kinase FERONIA 470 580 - -
Vimu11g00405 848 ProSiteProfiles Protein kinase domain profile. 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00405 848 Pfam Protein tyrosine and serine/threonine kinase 507 772 IPR001245 GO:0004672|GO:0006468
Vimu11g00405 848 FunFam Receptor-like protein kinase FERONIA 581 798 - -
Vimu11g00405 848 Gene3D Transferase(Phosphotransferase) domain 1 581 800 - -
Vimu11g00405 848 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Vimu11g00405 848 FunFam Putative receptor-like protein kinase 38 186 - -
Vimu11g00405 848 PANTHER OS07G0166700 PROTEIN 492 782 IPR045272 GO:0004714|GO:0006468
Vimu11g00405 848 Pfam Malectin-like domain 41 399 IPR024788 -
Vimu11g00405 848 FunFam Putative receptor-like protein kinase 213 400 - -
Vimu11g00405 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00405 Vimu-Chr11 4306128 4308674 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00405 14 848 Receptor kinase-like Gene Family AT2G23200 43.860 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu11g00405 Malectin_like 1.3e-28 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00405 - - gmx:100789555 1146.34