LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g00403	ATGGCGACTGTTCAGCTCTGTATAGCACTTCTTTTCCTTCTTCAGCTCTTGTCACTGCAGTTCGCCTCACTGGGCTACAACGTCCCAGATAAGTACTTCATAAATTGTGGGTCAGACAACAGTGTTACCGAAAGTGGAAAGGTCTACGTTGGTGAATCAACACTTCAAGCCACTTTTAGCAGCAGTAACACAGAAAGGAACCAGTCATCGGTTCCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGAATGGACTCTTGGTATAAGTTCGACATCGATAAAAATGGCACCTACCTGGTACGCCTCCATTTCTTCCCTTTCTCTTCTCCCACTAATCTTTCCTCTGCCACGTTCAACGTTTCAGTTCCTGGCTTTTGGTTGTTGCAAAACTCTAATGGTAGAAATGATACCAATAACAACTCTGCTTTAGTAAAAGAGTTTTTCATGGAAATCAGAACCCCCAGCATAAAAATAACTTTCAGACCTCTGGAATCATCTTTTGCGTTTGTTAATGCCATAGAACTGTTCGTACTACCCCTCAATCTGATATCCGACAAAGTGTCGCGTTTCACTCCGATTGGGGGTACATCTCCCCTCAGCGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAACGCAGACTTAATGTTGGTGGCCAAACTACCAGAGATATCTTATTAAGAAACTGGATTCCAGATGATATATATCTCACTTATCCGGAAAACGCCAAGAATCGTACCCCTTACCAGGGTAAAATCGTGCCCCGTGTAGGTGATGACTCCGATGGTCCAAACGCAACTAATTATACTGCACCATCTGAGGTGTACGGAACTGCTAAGGAGTCCATTAACATATCTGACAGTGCCAGAGACCTTAGCCTTTTCAACATAACATGGGCTCTTCCGGTGGACAGCAACACAGACCATTTCCTTCGGCTTCACTTCTGTGACTATCTCAGCTCACAAGTTGGCCTCACATTCTTCGATCTTTCCATTTATGACGCCCATGTCATTCAGATTAATACTGAGGAAGCAGACGTGTCTAACGAGTTGCCTGCCCCTTATTACTATGATTTCGTGGTGAACTCTGACAACTCTGGAATAATTAAGGTCAGCCTAACACCTGATGGAACCGCTGCCATACCAAATGCCTTTTTGAACGGGCTAGAAATAATGAAAGTGATTGAATCATCAAATTCTGTCCCCCCTGACTTGGAAGAACCGGACTCCGAGTATAATCGACTTCCTCTGTTACTGGGTTCAGTTCTCGGTGGTTTAGTCTTGGTATCTATTGTTGTGCTATTTGGCTTTCTTTGGCGTTGTAAAATGAAGAAGGAAAAGTCCGCTGAGAATTCGGACTGGCTGCCAATTCTGGATAATGCTGGAGGGAGTTCTCATGGTAGGTTGACTGATATAACCAATCACTGCTCTCCCATTCCCAAAATAAACCTAGAGCTCAAAATTCCATTGATTGATCTTCAACTGGCAACAAAGAGCTTCCACGCAACTCAGCTAATTGGCAAGGGTGGTTTTGGAAACGTCTACAAGGGAGTCCTCAGGAATGGCATGACGGTGGCGGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCGGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAGTACAATGTTGCCAAGCTTGTCCTGGAAGGTGAGGCTTCAAATATGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTAAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGGTCAGGTCCTGATACTCAACCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGATATCTTGATCCTGAGTATTTCGGGTCGCAACAGCTGACAGAAAAATCTGATGTCTACTCATTTGGGGTAGTTCTTTTGGAAGTTTTGTGTGCAAGAGCAGCGATTGACCCATCTCTTCCAACAGATCAGATAAACTTGGCAGAATGGGGATTGCTTTGCAAAAACAAGGGGATACTCCAAGATATCATCGATCCTTCCATCAAGGACCAAATTAATCAAAACTCACTCAGAAAATTTAGTGAGACCATAGAAAAATGCTTGCAAGAAGATGGTTCTGATAGGCCATCCATGGGTGATGTGTTGTGGGACCTGGAGTATGCGCTGCAGCTTCAGACAGGGCCGTATGATGATAGTTCTAGTGGTGTTTCTGCATCACTTCAACTTCCCAATGTTCGGCGTCTTCCTTCACTCTCTACACTGAATGAAGCGGGTGATGAATCCGATTGCGCTGTGGATTACGCTTTCTCCGAAGATTGA	2469	0.4443	MATVQLCIALLFLLQLLSLQFASLGYNVPDKYFINCGSDNSVTESGKVYVGESTLQATFSSSNTERNQSSVPSPLYQTARIFRMDSWYKFDIDKNGTYLVRLHFFPFSSPTNLSSATFNVSVPGFWLLQNSNGRNDTNNNSALVKEFFMEIRTPSIKITFRPLESSFAFVNAIELFVLPLNLISDKVSRFTPIGGTSPLSGGLYSRVLETKRRLNVGGQTTRDILLRNWIPDDIYLTYPENAKNRTPYQGKIVPRVGDDSDGPNATNYTAPSEVYGTAKESINISDSARDLSLFNITWALPVDSNTDHFLRLHFCDYLSSQVGLTFFDLSIYDAHVIQINTEEADVSNELPAPYYYDFVVNSDNSGIIKVSLTPDGTAAIPNAFLNGLEIMKVIESSNSVPPDLEEPDSEYNRLPLLLGSVLGGLVLVSIVVLFGFLWRCKMKKEKSAENSDWLPILDNAGGSSHGRLTDITNHCSPIPKINLELKIPLIDLQLATKSFHATQLIGKGGFGNVYKGVLRNGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIRHKHLVSLIGYCDERFEMILVYEYMEKGTLRDHLYSTMLPSLSWKVRLQICIDSARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVADFGLSRSGPDTQPHVTTGVKGTFGYLDPEYFGSQQLTEKSDVYSFGVVLLEVLCARAAIDPSLPTDQINLAEWGLLCKNKGILQDIIDPSIKDQINQNSLRKFSETIEKCLQEDGSDRPSMGDVLWDLEYALQLQTGPYDDSSSGVSASLQLPNVRRLPSLSTLNEAGDESDCAVDYAFSED	822

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g00403	822	FunFam	Putative receptor-like protein kinase	31	179	-	-
	Vimu11g00403	822	SUPERFAMILY	Protein kinase-like (PK-like)	487	766	IPR011009	-
	Vimu11g00403	822	Gene3D	-	31	177	-	-
	Vimu11g00403	822	Gene3D	-	209	394	-	-
	Vimu11g00403	822	ProSitePatterns	Protein kinases ATP-binding region signature.	505	527	IPR017441	GO:0005524
	Vimu11g00403	822	FunFam	receptor-like protein kinase FERONIA	466	574	-	-
	Vimu11g00403	822	ProSiteProfiles	Protein kinase domain profile.	499	771	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu11g00403	822	FunFam	Putative receptor-like protein kinase	206	394	-	-
	Vimu11g00403	822	Gene3D	Transferase(Phosphotransferase) domain 1	575	783	-	-
	Vimu11g00403	822	Pfam	Protein tyrosine and serine/threonine kinase	501	765	IPR001245	GO:0004672\|GO:0006468
	Vimu11g00403	822	Pfam	Malectin-like domain	34	393	IPR024788	-
	Vimu11g00403	822	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	619	631	IPR008271	GO:0004672\|GO:0006468
	Vimu11g00403	822	CDD	STKc_IRAK	505	769	-	-
	Vimu11g00403	822	SMART	serkin_6	499	771	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu11g00403	822	Gene3D	Phosphorylase Kinase; domain 1	469	574	-	-
	Vimu11g00403	822	MobiDBLite	consensus disorder prediction	247	271	-	-
	Vimu11g00403	822	PANTHER	OS07G0166700 PROTEIN	486	775	IPR045272	GO:0004714\|GO:0006468
	Vimu11g00403	822	FunFam	Receptor-like protein kinase FERONIA	575	788	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g00403	Vimu-Chr11	4301031	4303524	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g00403	25	775	Receptor kinase-like Gene Family	AT4G39110	44.898	0.0	579

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vimu11g00403		Malectin_like	5.6e-26	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g00403	-		-	gmx:100789555	1105.12