Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00395 TTGCCAACACTAGCAGATGACATTAGCATTGTCCTAATTCTCCCCTCTAAAGTATATGCAAAACTGGGTGGGAACACAAGACATGCCGTAGTGCTGAGTTTCACCACTTCCAACTTCATATCCCTTCTCCTCAATCTCTTTCTTTCTCCTTATTTAAGCTCAACAACTTCTCCCTCTCCCACAAAACTATTTTCTACCATGACCTTCCTCACGGAGGATCATGATCATGATCATGATCATCAATGTGAAATTGTGACTCCTGTAGGAGAATGGCTGAGTTTAGGCCTGAAAGGAGACATGACTGTGGAGGCAGCAGAAGAACAAAAGTCGTCAAAGGCTGAGCAGAACAAGGTATTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGCTCACAAGCTTTGGGGGGTCACCAGAATGCACACAAGAGGGAGAGAGAAGCAGCAAGAAGCTACCAGTCTCATAGGATGATGACAGCAAGATCACCAATGGGGTTTGCTTACACTTCTCTGGCATCTAGGTCACTGGGAATACAGCCTCACTCCCTTGTGCACAAACCAGGCAGAGAAAGGTCTGCTATGGTCGCTAGATTCAGTGATGCCAACATTAATGGCGCTGGAGTCGCATCCTGGACACCCTTTCTGCTCGAACAGGCCATGGATTTCTATTGGCCAGGTAGCTTTCGGCCGGACTTGCCAAAACAAGAATCAGATGTTAATAATAAGATTGACTTAGATCTTCACCTCTGA 747 0.4565 MPTLADDISIVLILPSKVYAKLGGNTRHAVVLSFTTSNFISLLLNLFLSPYLSSTTSPSPTKLFSTMTFLTEDHDHDHDHQCEIVTPVGEWLSLGLKGDMTVEAAEEQKSSKAEQNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMTARSPMGFAYTSLASRSLGIQPHSLVHKPGRERSAMVARFSDANINGAGVASWTPFLLEQAMDFYWPGSFRPDLPKQESDVNNKIDLDLHL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00395 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Vimu11g00395 248 Gene3D Classic Zinc Finger 93 169 - -
Vimu11g00395 248 SUPERFAMILY beta-beta-alpha zinc fingers 116 146 IPR036236 -
Vimu11g00395 248 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Vimu11g00395 248 PANTHER ZINC FINGER PROTEIN 4-LIKE 77 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00395 Vimu-Chr11 4232769 4233515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00395 83 238 C2H2 Transcription Factor Family AT1G24625 41.139 5.66e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00395 - - ccaj:109809498 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00395 11 4232769 4233515 Vimu11g00395 11 4232769 4233515 ECH