Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00390 ATGTCTGGGAACACGGAAGAGCAGCCATTGTTGCCGGACTCCTTTCAGGAAGAAGAGGAGCTCATAGCGTTTCTGGACTCGGGCAACCTCGAGGGAGACCTTCAGGCCGGAGCTATTGCCGGCTACTCCCTGCTGTGGCTTTTGATGTGGGCAACAGCCATGGGCCTCTTGATCCAGCTCCTCTCCGCCCGCCTCGGCGTCGCCACCGGGAAGCACCTCGCTGAACTCTGCAGGGAAGAGTACCCTGCGTGGGCCCGGATAGTGCTTTGGATCATGGCCGAACTCGCTCTCATTGGCTCTGATATTCAGGAGGTTATTAGAAGCATTATTGCCATCAGGATTCTCAGTCGTGGAGTTGTGCCCCTTTGGGCGGGGGTCGTCATCACTGCTCTTGATTGCTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGACACTGGAAGCTCTTTTTGTTGTTCTCATTGGTGTGATGGCAATCTCGTTCGCGTGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTGCTTCTTGGCGTTTTGATTCCAAAACTCAGCTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCGCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAGGGCCGGGTTCAAGAAGCTCTTAATTATTACTCTATAGAGTCCACCCTTGCCCTTGTTGTCTCCTTTATCATAAATATATTTGTCACAACGGTGTTCGCTAAGGGTTTTTATGGTTCTGAACTTGCAAACAGCATTGGTCTTGCAAATGCAGGACAGTATCTTGAGGAGACATATGGGGGTGGACTGTTTCCAATTTTATACATATGGGGTATTGGGTTATTAGCAGCAAGTCAAAGTAGCACTATTACTGGTACTTATGCTGTACAATTCATCATGGGAGGTTTTCTAAATTTGAGATTAAAGAAGTGGATGAGGGCATTGATTACTCGAAGTTTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTATCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGCTATGTTCTTAAGATTACATCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGACGGAATTCTTTTCCTCCGAAGTTAACGGTCCCTTGTTTGGTGCTGTAGTGGGTGCAATAACTGCTGCATATGTTGCATTCTTACTATACCTTATATGGAGGGCCATTGCTTTTTACCTTGGCAAAGCATAA 1278 0.4695 MSGNTEEQPLLPDSFQEEEELIAFLDSGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWIMAELALIGSDIQEVIRSIIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRTLEALFVVLIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLANAGQYLEETYGGGLFPILYIWGIGLLAASQSSTITGTYAVQFIMGGFLNLRLKKWMRALITRSFQIPFALIPLLYLVSKEQIMGTFRIGYVLKITSWLVAALVIVINGYLLTEFFSSEVNGPLFGAVVGAITAAYVAFLLYLIWRAIAFYLGKA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00390 425 PRINTS Natural resistance-associated macrophage protein signature 144 165 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 PRINTS Natural resistance-associated macrophage protein signature 119 138 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 PRINTS Natural resistance-associated macrophage protein signature 300 319 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 PRINTS Natural resistance-associated macrophage protein signature 89 115 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 PRINTS Natural resistance-associated macrophage protein signature 193 216 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 PRINTS Natural resistance-associated macrophage protein signature 328 345 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 334 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 NCBIfam Nramp family divalent metal transporter 22 344 - -
Vimu11g00390 425 Pfam Natural resistance-associated macrophage protein 31 337 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g00390 425 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 22 340 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00390 Vimu-Chr11 4182109 4185566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00390 22 420 Inorganic Solute Cotransporters AT2G23150 73.086 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00390 K21398 - gmx:100812381 704.516