Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00372 ATGTGTTATTATCCCTACACACGCATTAAATATGCGCACGAACCACCGGCACTATTTCTCCGCTTCTTGCTAGTATGCACCCTTGTCGCCTTGCGTGCGCCGGTTGCGCAACCCCCTAACCTGCGCATCTCCACCCACCTCATCGAAACTAAGACCATCACAGCCCTTCATCAGCTCCACAGAACCCAGATCTCGGGTTCCAATTCCCAATCCATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGCGATCAGGATGATTATGAGGTTGTCCGAAAAGTGGGAAGGGGGAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGACCGCTGTATAATCAAGATTCTCAAGCCTGTTAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGGCCAAATATTGTTAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAATTTTATATCCAACCTTGACGGATTATGACATACGCTATTATATATACGAGCTTCTCAAGGCCTTAGATTACTGCCATTCCCAAGGAATAATGCATAGAGATGTGAAGCCTCATAATGTTATGATAGATCATGAATTACGGAAACTCCGGTTGATAGATTGGGGTCTTGCTGAATTTTATCACCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGATTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAGCCTTTCTTTTATGGTCACGACAACCATGACCAACTAGTCAAAATAGCTAAGGTGCTTGGTACTGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAACCTTGGTCTAAATTTATTAATGCTGATAATCAACATCTCGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATACGATCACCAGGACAGGCTTACAGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGCAGCAGAATGAGGACACAGTAA 1215 0.4263 MCYYPYTRIKYAHEPPALFLRFLLVCTLVALRAPVAQPPNLRISTHLIETKTITALHQLHRTQISGSNSQSMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNDRCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKILYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00372 404 Gene3D Phosphorylase Kinase; domain 1 105 181 - -
Vimu11g00372 404 PANTHER CASEIN KINASE II SUBUNIT ALPHA 66 400 IPR045216 GO:0004674|GO:0006468
Vimu11g00372 404 ProSiteProfiles Protein kinase domain profile. 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00372 404 FunFam Casein kinase II subunit alpha 182 393 - -
Vimu11g00372 404 SUPERFAMILY Protein kinase-like (PK-like) 71 394 IPR011009 -
Vimu11g00372 404 FunFam Casein kinase II subunit alpha 91 181 - -
Vimu11g00372 404 Pfam Protein kinase domain 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00372 404 CDD STKc_CK2_alpha 86 390 IPR045216 GO:0004674|GO:0006468
Vimu11g00372 404 SMART serkin_6 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00372 404 Gene3D Transferase(Phosphotransferase) domain 1 182 390 - -
Vimu11g00372 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Vimu11g00372 404 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00372 Vimu-Chr11 3996529 4003355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00372 103 390 Core Cell Cycle Gene Families AT1G76540 29.126 4.91e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vimu11g00372 Pkinase 2.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00372 K03097 - gmx:100819679 751.895