Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00366 ATGACGCAATTCACACCCTTCCACCAAATCACACCTCTTCCCAACCCTACCATGAACAAAAACCAAATCCCTAGGACTAGGCCCTGGCCTGCAGGCTTTCCTACCTCCAAGACCTTAACCAACTTCGCCGACGCTAACTGCATGGAACAGTTACTTCTTCACTGTGCCAACGCTATTCAAACCAACGACGTAACCCTCGCACAGCAAATCCTTTGGGTCCTCAACAACATAGCATCCCCCGACGGCGACTCCAATCAACGCCTTGCCTCCAGCTTCCTCCGTGCCCTCACTGCACGTGCCGCCCAAACCGGCACCTGTAAGATGCTCGTCGCCGTAGCCGATCACGCCCGCACCAACCTCTCCATAGACACCCACAAGTTCTCCGTCATCGAGCTCGCCAACTTCGTCGACCTAACCCCCTGGCACCGCTTCGGCTTCACCGCTGCCAACGCCGCCATCCTAGAAGCCACTGAGGGTTTCTCCGTCATCCACATCGTCGATCTCAGCCTCACGCATTGCATGCAGATTCCGACGCTCATCGACGCCATCGCCAGCCGCCACGAGGTCCCTCCTCTCATCAAACTCACTGTCCCCGATGCCACCTTCAGAGACATCCCTCCTATGCTCGACCTCTCCTACGACGAACTCGGCGCCAAGTTGGTCAATTTCGCAAGGTCCAGGAACGTCGTCATGGAGTTCAGAGTGGTTTCTTCAACTTACCAAGATGGCTTTGCTGGTTTGATCGAACAGTTAAGAGTGCAACAACAGCATTTTGTTTATGCAGTAGAACCTCGTCCCTGTGAGGCTTTGGTTATCAACTGTCACATGATGCTTCACTACATCCCAGAGGAAACCCTACACGCGATGCCTGAAGGTGATTTAACCTCTTTGCTCTACGATTCTTCTTCGGGTGCCGGTTCTTCTTCTGCCATTAGTGTTACTTCCACTTCCTCGCTGCGATCATTGTTCCTTAAGTCCCTGCGGGGTTTAGATCCAACGGTTGTAATATTGGTGGATGAAGATGCAGATTTGACATCCAATAACTTGGTTTGCAGGCTAAGATCTGCGTTTAACTATCTGTGGATACCATACGACACTGTGGACACGTTCCTTCCACGAGGGAGCAAGCAAAGACAGTGGTATGAGGCAGACATCTGCTGGAAGATTGAGAACGTGATAGCGCAGGAAGGGGTTCAGAGGGTGGAGAGGGTTGAGCCTAAGAACAGGTGGGAGCAGCGAATGAAGAACGTGAACTTCCAAGGGGTAGCTTTTAGTGAGGACTCTGTTGCGGAGGTGAAGGGCATGCTCGATGAGCATGCTGCGGGGTGGGGATTGAAGAGGGAAGATGAACACATTGTCCTTACTTGGAAAGGACACAACGTGGTCTTTGCTTCTGCTTGGTTACCTGCTTGA 1413 0.5237 MTQFTPFHQITPLPNPTMNKNQIPRTRPWPAGFPTSKTLTNFADANCMEQLLLHCANAIQTNDVTLAQQILWVLNNIASPDGDSNQRLASSFLRALTARAAQTGTCKMLVAVADHARTNLSIDTHKFSVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVPDATFRDIPPMLDLSYDELGAKLVNFARSRNVVMEFRVVSSTYQDGFAGLIEQLRVQQQHFVYAVEPRPCEALVINCHMMLHYIPEETLHAMPEGDLTSLLYDSSSGAGSSSAISVTSTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAQEGVQRVERVEPKNRWEQRMKNVNFQGVAFSEDSVAEVKGMLDEHAAGWGLKREDEHIVLTWKGHNVVFASAWLPA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00366 470 Pfam GRAS domain family 48 467 IPR005202 -
Vimu11g00366 470 ProSiteProfiles GRAS family profile. 39 468 IPR005202 -
Vimu11g00366 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 457 IPR005202 -
Vimu11g00366 470 MobiDBLite consensus disorder prediction 1 27 - -
Vimu11g00366 470 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00366 Vimu-Chr11 3904710 3906122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00366 30 469 GRAS Transcription Factor Family AT3G49950 57.432 1.61e-176 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu11g00366 GRAS 8.3e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00366 - - gmx:100814364 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00366 11 3904710 3906122 Vimu11g00366 11 3904710 3906122 ECH