Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00365 ATGAGTTGCAACGGCTGCCGAGTTCTTCGAAAGGGATGTAGCGAATCCTGCGTGTTGCGTCCTTGTTTGCAGTGGATCGAAACATCCGAAGCTCAAGGCCATGCCACCGTCTTCGTTGCCAAATTCTTTGGCCGCGCTGACCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAAAGACCTGGTAACTTTTTTTTTTTTTTTACTCTCTTTACAGTATTCCTAGCCCTACCTTATACCCCTATGCGTCTTGCCTATGCAGCTCTGTTTCAGTCTTTGCTGTTCGAAGCATGCGGGAGAACGGTCAACCCCGTCAACGGTGCTGTGGGCCTTCTCTGGACCGGAAACTGGCACGTCTGCCAGGCGGCCGTCGAGACCGTGCTCCGCGGGGGTACGCTCAGGCCCATGCCGGAGCTCATGGGACTCTCCTCTCCCGCTTCCGCCGCCGACGAGACATCGGAAGTTGCATGCTCCGACATTTGGAGAATCCGAGACCCGAACCCGACTTGTGGTTTGGCGAACACCAGATCCCATAACAGAGTCTCCTCCGCCAGCAAACGCAAGCGGTTGGAGGAGCCGGCGAAGCTTCAGGCGGCGCCGAATCTCGATCTCCGGCTGACGCCGATTTTCCTGCAGAAGAAGGTTGAAAACCGGCGGCCGGTGTCGCCGTCGATGACCTCCGAGGAGTCAGGCACGACGACGGCGTGCTTGGAGAGCAAATTCGGGGATCAGTGGGGTCACAGTGGAGACCGGAAAGTTCTCAACCTTTTCATTTGA 777 0.5598 MSCNGCRVLRKGCSESCVLRPCLQWIETSEAQGHATVFVAKFFGRADLMSFISNVPENQRPGNFFFFFTLFTVFLALPYTPMRLAYAALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLSSPASAADETSEVACSDIWRIRDPNPTCGLANTRSHNRVSSASKRKRLEEPAKLQAAPNLDLRLTPIFLQKKVENRRPVSPSMTSEESGTTTACLESKFGDQWGHSGDRKVLNLFI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00365 258 ProSiteProfiles LOB domain profile. 1 133 IPR004883 -
Vimu11g00365 258 Pfam Lateral organ boundaries (LOB) domain 2 61 IPR004883 -
Vimu11g00365 258 Pfam Lateral organ boundaries (LOB) domain 87 127 IPR004883 -
Vimu11g00365 258 MobiDBLite consensus disorder prediction 172 193 - -
Vimu11g00365 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00365 Vimu-Chr11 3868980 3869756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00365 1 258 AS2 family AT4G37540 52.206 6.53e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu11g00365 LOB 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00365 - - gmx:100816480 354.755