Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00362 ATGGCCCTAAGGCCCTTCCATTACAACTTCTCGCGCGATAGATTGCTTCTTCTCCTCCGCTCCTCTCTTTCCCATTCCTTTCCCTCTCCTCCTATCCGCTCTCCCAATTTCCCCATAACTTTTCCACCCGCTTCCGCCTTCCGCCACTTCGCCGCCGCCCCTCTCGCTCGCTCTCCGCCGCCGCCGCCCCTCGACGCCATGGCGCAGAAATTCGGAAAGTCCACGCGTCGCCCCGGCGCCTCCTCCAAGGCCAGGGTTTACGCGGACGTCAACGTTGTTCGCCCTAAGGAATATTGGGACTACGAGTCCCTAAACGTCCAGTGGGGGGAGCAAGATGATTACGAGGTGGTGAGGAAGGTCGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGCGTTCACTGCACTGATGGTGAGAAATGTGTCATTAAGATTCTGAAACCCGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGTGGGCCTAATATTGTAAAGTTGCTTGACATTGTTAGAGATCAGCAGTCAAAGACCCCAAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCAACATTGTCAGACTATGATATTCGATATTACATTTTTGAACTTCTGAAGGCAAACGCAAATTTTAGTATGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTGAAACCACATAATGTAATGATTGATCATGAGCAGCGTAAGCTACGCCTTATAGATTGGGGACTTGCAGAGTTCTATCATCCTGGAAAAGAGTATAATGTTCGTGTGGCTTCAAGCCCAGTTGAACATCAGGCAGAAGGGCGGGAGGGTGGAGAGGGAAAGGGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTTCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTGCTTGGGACAGATGAATTAAGTGCATATTTGGATAAGTATCGAATAGAGTTGGACCCACATCTTGCGGCACTAATTGGGAGGCATAGCCGTAAGCCTTGGGCAAAGTTTATTAATGTAGACAATCATCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTATTACGTTATGATCACCAAGAACGTCCCACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAGTCAGAAATGCAGAAAGTAGTAGAACT 1299 0.4596 MALRPFHYNFSRDRLLLLLRSSLSHSFPSPPIRSPNFPITFPPASAFRHFAAAPLARSPPPPPLDAMAQKFGKSTRRPGASSKARVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIFELLKANANFSMALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASSPVEHQAEGREGGEGKGYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLDKYRIELDPHLAALIGRHSRKPWAKFINVDNHHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRT 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00362 433 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Vimu11g00362 433 SUPERFAMILY Protein kinase-like (PK-like) 86 426 IPR011009 -
Vimu11g00362 433 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Vimu11g00362 433 PANTHER CASEIN KINASE II SUBUNIT ALPHA 78 431 IPR045216 GO:0004674|GO:0006468
Vimu11g00362 433 CDD STKc_CK2_alpha 95 422 IPR045216 GO:0004674|GO:0006468
Vimu11g00362 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vimu11g00362 433 Pfam Protein kinase domain 114 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00362 433 ProSiteProfiles Protein kinase domain profile. 114 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00362 433 FunFam Casein kinase II subunit alpha 100 190 - -
Vimu11g00362 433 Gene3D Transferase(Phosphotransferase) domain 1 191 422 - -
Vimu11g00362 433 FunFam Casein kinase II subunit alpha 191 425 - -
Vimu11g00362 433 SMART serkin_6 114 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00362 Vimu-Chr11 3833283 3840713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00362 112 430 Core Cell Cycle Gene Families AT1G20930 27.219 1.28e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vimu11g00362 Pkinase 3e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00362 K03097 - gmx:100776388 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00362 11 3833283 3840713 Vimu11g00362 11 3833283 3840713 ECH