Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00355 ATGGAGAGTTATTTGCATGAAAATTTTGGAGGAGTGAAGTCCAAAAACACTACTGACGAAGCTCTTCAAAAATGGAGGAAGGTATGTGGGGTGGTAAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAACATCTCTAAACGTTACGAAGCAGCTGCTATGCGTCGTACCAATCAGGTAATCAATCTCTATATGGACATTTTGAACCTCGAATGTATAGGTGTTCAACTAAGCGATTATGTTGTGCCTGATGAAGTTAAAGCTGCTGGTTTCCAAATCTGTGCGGATGAAATGGGGTCTATTGTTGAAGGCCACGACATAAAGAAGCTTAAGTTTCATGGTGGAGTAAATGGCATTGCAGAAAAGCTCTCAACATCAACCACCACGGGGCTTAGTGGTGATTCTGAATCACGGCGGAGGAGACAAGAGCTTTTTGGAGTCAATAAATTCACTGAAAGTGAAATTCGGAGTTTCTGGGTTTTTGTTTTCGAAGCCGTACAAGACATGACTCTCATGATCCTTGGGGCGTGTGCTTTTGTGTCTCTGATAGTTGGCATATTAACGGAAGGATGGCCCAAAGGTGCTCATGATGGCCTTGGAATTGTTGCAAGTATCTTACTAGTAGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCGTTGCAATTCAAGGACTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAACGGTTACAGGCAGAAAATGTCAATATATAATTTACTTCCCGGTGACATTGTGCACCTTGCCATTGGAGACCAAGTTCCCGCGGATGGCTTATTTGTTACAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAACCCTTTTCTTCTATCTGGAACCAAGGTCCAAGATGGATCCTGCACCATGTTGGTTACCACTGTCGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGAGGAGATGATGAAACCCCATTGCAAGTTAAACTGAATGGAGTAGCAACCATTATTGGGAAGATAGGCCTATTCTTTGCAGTGGTTACCTTTACAGTTTTGGTGAAAGGACTCATGGGCCGCAAACTCAAAGAGGGAAGATTCTGGTGGTGGTCAGCAGATGATGCAATGGAGATGTTGGAATTCTTTGCCATTGCGGTTACCATCGTCGTTGTTGCTGTCCCAGAGGGGTTACCCTTAGCTGTGACATTGAGCCTTGCATTTGCAATGAAGAAGATGATGAATGACAAGGCCCTGGTGAGGCATTTGGCAGCTTGTGAAACTATGGGATCAGCCACAACCATATGTAGTGACAAGACTGGGACACTGACAACCAACCGCATGACTGTTGTGAAAACATGCATTTGTATGAAGGTCAAGGAGGTGAGTAATAATTCTAGTTTGTCCTCTGAACTCCCAGGTCCTGCTTTGAAAATGTTGCTTCAGTCAATATTTAGTAACACTGGAGGAGAAGTTGTGGTTAACAAGAAAGGTAAGCGTGAGATCTTGGGGACTCCAACAGAATCAGCACTGTTGCAGTTTGGCTTATCATTGGGTGGGGATTTTCATGCAGAGAGACAAACGTGTAAGATTGTTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGTGTGGTTTTGGAGATCCCTGGAGGAGCTTTAAGGGCTCATTGTAAAGGTGCTTCCGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAGATGGTGCTGTTGTCTCCATCGATGAAGAATCGGGTAATTATCTCACGAGTACAATCAACCAGTTTGCTGGTGAGGCACTAAGAACTCTCTGCCTTGCATATATTGAATTGGAAAATGAGTTTTCAGATCAAGACCCTATTCCTGCAACTGGCTACACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGCGTTAAGGAATCGGTTGATGTGTGCCGATCTGCTGGAATAATGGTGAGAATGGTTACGGGAGACAATATAAATACTGCAAAGGCCATAGCCAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAGGGTCCAGACTTCAGAGAGAAGTCTCAGGAGGAATTGTTTGAGCTAATTCCCAAAATTCAGGTTATGGCTCGATCATCACCTCTAGACAAACATACACTAGTGAAACACCTACGTACCACGTTCGGTGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCGGCCCTTCATGAAGCTGACATTGGACTTGCTATGGGAATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATTATTTTGGATGATAATTTCTCCACAATAGTGACAGTAGCTAAATGGGGGCGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTCACTGTAAATGTGGTTGCCTTACTAGTGAACTTCACGTCAGCATGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACAGAACCTCCAACTGATGATTTGATGAAGCGTGCACCAGTTGGAAGGAGAGGTGACTTCATCAACAATGTCATGTGGAGGAATATCTTAGGACAAGCATTGTATCAGTTTGTGGTGATATGGTTTCTTCAGACAGTAGGTAAATGGGTCTTTTTCCTCAGAGGCCCGAATGCTGAAGTGGTTTTAAACACTCTTATTTTCAACACATTTGTATTCTGTCAGGTTTTCAATGAGGTAAATTCACGTGAGATGGAGGAAATAGATGTTTTTAAAGGCATATGGGAAAATCATGTATTTATAGGTGTCCTCGGTTGCACTGTTTTCTTTCAAATCGTAATAGTTGAGTACTTGGGAACCTTTGCCAACACAACACCTCTCAGTCTGGTACAATGGATCTTCTGCTTAGGGGTTGGATATGGAAGCATGCCACTAGCAGTTCGCTTGAAGCAGATCCCCGTCTGA 3030 0.435 MESYLHENFGGVKSKNTTDEALQKWRKVCGVVKNPKRRFRFTANISKRYEAAAMRRTNQVINLYMDILNLECIGVQLSDYVVPDEVKAAGFQICADEMGSIVEGHDIKKLKFHGGVNGIAEKLSTSTTTGLSGDSESRRRRQELFGVNKFTESEIRSFWVFVFEAVQDMTLMILGACAFVSLIVGILTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDIVHLAIGDQVPADGLFVTGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFTVLVKGLMGRKLKEGRFWWWSADDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMKVKEVSNNSSLSSELPGPALKMLLQSIFSNTGGEVVVNKKGKREILGTPTESALLQFGLSLGGDFHAERQTCKIVKVEPFNSEKKRMGVVLEIPGGALRAHCKGASEIILAACDKVINSDGAVVSIDEESGNYLTSTINQFAGEALRTLCLAYIELENEFSDQDPIPATGYTCIGVVGIKDPVRPGVKESVDVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRRGDFINNVMWRNILGQALYQFVVIWFLQTVGKWVFFLRGPNAEVVLNTLIFNTFVFCQVFNEVNSREMEEIDVFKGIWENHVFIGVLGCTVFFQIVIVEYLGTFANTTPLSLVQWIFCLGVGYGSMPLAVRLKQIPV 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00355 1009 Pfam E1-E2 ATPase 233 427 - -
Vimu11g00355 1009 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 657 IPR023299 GO:0000166
Vimu11g00355 1009 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Vimu11g00355 1009 SUPERFAMILY Calcium ATPase, transmembrane domain M 113 1008 IPR023298 -
Vimu11g00355 1009 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Vimu11g00355 1009 PRINTS P-type cation-transporting ATPase superfamily signature 748 767 - -
Vimu11g00355 1009 PRINTS P-type cation-transporting ATPase superfamily signature 772 784 - -
Vimu11g00355 1009 PRINTS P-type cation-transporting ATPase superfamily signature 645 656 - -
Vimu11g00355 1009 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Vimu11g00355 1009 PRINTS P-type cation-transporting ATPase superfamily signature 667 677 - -
Vimu11g00355 1009 Pfam Cation transporter/ATPase, N-terminus 113 181 IPR004014 -
Vimu11g00355 1009 NCBIfam HAD-IC family P-type ATPase 541 693 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00355 1009 NCBIfam HAD-IC family P-type ATPase 382 471 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00355 1009 NCBIfam HAD-IC family P-type ATPase 719 834 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00355 1009 FunFam Calcium-transporting ATPase 641 793 - -
Vimu11g00355 1009 NCBIfam calcium-translocating P-type ATPase, PMCA-type 106 1009 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu11g00355 1009 SUPERFAMILY HAD-like 447 853 IPR036412 -
Vimu11g00355 1009 Gene3D - 446 793 IPR023214 -
Vimu11g00355 1009 SUPERFAMILY Calcium ATPase, transduction domain A 235 329 IPR008250 -
Vimu11g00355 1009 SFLD Haloacid Dehalogenase 431 800 - -
Vimu11g00355 1009 Gene3D - 164 994 - -
Vimu11g00355 1009 Gene3D - 459 652 IPR023299 GO:0000166
Vimu11g00355 1009 PRINTS H+-transporting ATPase (proton pump) signature 604 622 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00355 1009 PRINTS H+-transporting ATPase (proton pump) signature 748 764 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00355 1009 PRINTS H+-transporting ATPase (proton pump) signature 780 805 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00355 1009 CDD P-type_ATPase_Ca_PMCA-like 140 881 - -
Vimu11g00355 1009 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Vimu11g00355 1009 SMART Cation_ATPase_N_a_2 111 186 IPR004014 -
Vimu11g00355 1009 Gene3D - 135 332 - -
Vimu11g00355 1009 PANTHER CATION TRANSPORTING ATPASE 59 1008 - -
Vimu11g00355 1009 FunFam Calcium-transporting ATPase 212 332 - -
Vimu11g00355 1009 FunFam Calcium-transporting ATPase 459 652 - -
Vimu11g00355 1009 SFLD p-type atpase 431 800 IPR044492 -
Vimu11g00355 1009 FunFam Calcium-transporting ATPase 765 1009 - -
Vimu11g00355 1009 Pfam Cation transporting ATPase, C-terminus 833 1002 IPR006068 -
Vimu11g00355 1009 Pfam Cation transport ATPase (P-type) 508 586 - -
Vimu11g00355 1009 Gene3D - 18 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00355 Vimu-Chr11 3754279 3758548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00355 1 1009 Primary Pumps ATPases AT4G37640 78.621 0.0 1634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00355 K01537 - gmx:100815662 1811.19